Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000396-TA|BGIBMGA000396-PA|undefined
         (81 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8484| Best HMM Match : Heme_oxygenase (HMM E-Value=0)               25   6.4  
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)                    25   8.5  

>SB_8484| Best HMM Match : Heme_oxygenase (HMM E-Value=0)
          Length = 820

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 59  GFSNVKELYEKIAECYEFSPED 80
           G  ++ E+YEK+++   FSPE+
Sbjct: 412 GMESMAEVYEKLSQLPAFSPEN 433


>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
          Length = 884

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 44  FHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPED 80
           F    +HGSPL L  G   +    ++ +E +  SP +
Sbjct: 211 FRSTVSHGSPLSLCHGNEGILHSPDRHSEGFSLSPRN 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,650
Number of Sequences: 59808
Number of extensions: 65732
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 2
length of query: 81
length of database: 16,821,457
effective HSP length: 59
effective length of query: 22
effective length of database: 13,292,785
effective search space: 292441270
effective search space used: 292441270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)