GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000396-TA|BGIBMGA000396-PA|undefined
         (81 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    27   0.019
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    19   6.7  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    19   8.8  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 0.019
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 25  ESQSNGVDNSNGTQKSQLVFHCQQAH 50
           +S S+ VDNSN ++K   + H   AH
Sbjct: 249 KSPSHSVDNSNSSEKKSSIQHGDDAH 274


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 58  SGFSNVKELYEKIAECYE 75
           +GF NV E  +   EC E
Sbjct: 216 NGFRNVAESRKIFIECIE 233


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 5/20 (25%), Positives = 14/20 (70%)

Query: 62  NVKELYEKIAECYEFSPEDI 81
           N++E Y+++A   +F  +++
Sbjct: 338 NIREDYDRLARLTQFLDKEL 357


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607
Number of Sequences: 317
Number of extensions: 449
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 81
length of database: 114,650
effective HSP length: 46
effective length of query: 35
effective length of database: 100,068
effective search space:  3502380
effective search space used:  3502380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.1 bits)
S2: 36 (18.6 bits)