GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000396-TA|BGIBMGA000396-PA|undefined
         (81 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   0.72 
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   2.2  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    24   2.2  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    24   2.2  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    23   3.8  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    23   3.8  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.1  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    23   6.7  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    22   8.9  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    22   8.9  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 0.72
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 22  EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
           ED ++  + V   N  Q + + F       +PL  I      +E  E +   YE +  ++
Sbjct: 48  EDAKNMDSVVQKLNELQNNVVAFQKLLQEKTPLSSIQDLEGFREFMENLEHRYEMTVSEV 107


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 58  SGFSNVKELYEKIAECYEFSPEDI 81
           SGF N  E  EK+ E Y  S E +
Sbjct: 125 SGFENYVEESEKLQEIYHHSSESL 148


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 36  GTQKSQLVFHCQQAHGSPLGLISGFSNVK 64
           G  KSQ+V+     HG  LG +S  +N K
Sbjct: 165 GEGKSQIVYFNNSFHGRSLGSLSITANPK 193


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 25  ESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSP 78
           E + NGV          LV H   AHG   G ++  ++++ L +K  +C E  P
Sbjct: 182 EIEYNGVKKLCHDLSIPLVAHSPLAHGLLTGRVTTMADIENL-KKHHQCNEQPP 234


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 45  HCQQAHGSPLGLISGFSNVKELYEKIAECYE 75
           + +Q H S   L   F+   E++EKI E Y+
Sbjct: 357 YMEQLHNSTDLLKKAFAYTSEVFEKIVEEYK 387


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 25  ESQSNGVDNSNGTQKSQLVFH 45
           ES  N  DN +G+ + Q V H
Sbjct: 182 ESAQNNEDNKDGSSREQPVLH 202


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 1073

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 44 FHCQQAHGSPLGLISGFSNV 63
          FH  +  G+PL L+  FS+V
Sbjct: 15 FHVSEYDGAPLLLLGSFSSV 34


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
          Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 50 HGSPLGLISGFSNVKELYEKIAECYEF 76
          HG+ +  +S      +LY KIA  YEF
Sbjct: 56 HGAFVEAVSVQKAYNKLYAKIANDYEF 82


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 34  SNGTQKSQLVFHCQQAHGSPLGLISGFSNVKE 65
           + G      V+  Q  +G+PL +  GFS  ++
Sbjct: 169 NGGLSFQSTVYPTQDENGNPLSIEFGFSTFRD 200


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 63  VKELYEKIAECYEFSPED 80
           V+ L  K+A+ Y+ SPED
Sbjct: 311 VQNLILKLAKDYDMSPED 328


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,983
Number of Sequences: 5004
Number of extensions: 9412
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 81
length of database: 2,362,478
effective HSP length: 60
effective length of query: 21
effective length of database: 2,062,238
effective search space: 43306998
effective search space used: 43306998
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)