GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000396-TA|BGIBMGA000396-PA|undefined
         (81 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1093 + 34471262-34471334,34474526-34476759                       26   3.3  
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105...    25   7.6  
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576...    25   7.6  
04_03_0542 + 16940464-16940527,16941906-16942101,16942204-169423...    25   7.6  
04_01_0540 - 6993470-6993763,6993963-6994389,6995193-6995371           25   7.6  

>01_06_1093 + 34471262-34471334,34474526-34476759
          Length = 768

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 26  SQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYE 75
           S   G D+SNGT+K     + + A  + + L+   S+ +E+ E +   +E
Sbjct: 222 SDGLGTDSSNGTKKRPKTSNRKAATDNEISLMPPSSDPREVVEVLLMTFE 271


>07_03_0587 +
           19708841-19709282,19709693-19709883,19710429-19710568,
           19710955-19711380,19711540-19712685,19712805-19712934,
           19713257-19713492,19713575-19713710,19713793-19713869,
           19714692-19714798,19714896-19714996
          Length = 1043

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 23  DTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIA 71
           DT +     +N+NG   S    HC   +   LG++ G   ++E  ++IA
Sbjct: 481 DTTTLKWNKENTNGKAPSPRFSHCMFIYKDYLGILGG-CPIRESSQEIA 528


>04_03_0543 +
           16955440-16955518,16956623-16956726,16957456-16957655,
           16958554-16958654,16959408-16959603,16960243-16960324,
           16960402-16960668,16960790-16960917,16961285-16961465
          Length = 445

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 33  NSNGTQKSQLVFHCQQAHGSPL 54
           NS   +++Q+++H   AH +PL
Sbjct: 269 NSQWNKRAQVIYHVTSAHQNPL 290


>04_03_0542 +
           16940464-16940527,16941906-16942101,16942204-16942365,
           16942721-16942802,16942873-16943139,16943285-16943416
          Length = 300

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 33  NSNGTQKSQLVFHCQQAHGSPLGL 56
           NS+  +++Q+++H   AH +P+ L
Sbjct: 183 NSHWNKQAQVIYHVTSAHQNPIQL 206


>04_01_0540 - 6993470-6993763,6993963-6994389,6995193-6995371
          Length = 299

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 28 SNGVDNSNGTQKSQLVFHCQQAHGSPL 54
          SN  DN+NG Q   L F   Q H +P+
Sbjct: 14 SNIEDNNNGGQVLLLPFPAAQGHTNPM 40


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,191
Number of Sequences: 37544
Number of extensions: 51866
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 14,793,348
effective HSP length: 60
effective length of query: 21
effective length of database: 12,540,708
effective search space: 263354868
effective search space used: 263354868
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)