GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000396-TA|BGIBMGA000396-PA|undefined
         (81 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016169-1|AAH16169.1|  333|Homo sapiens GIPC PDZ domain contain...    55   3e-08
BC012810-1|AAH12810.1|  333|Homo sapiens GIPC PDZ domain contain...    55   3e-08
BC004226-1|AAH04226.2|  300|Homo sapiens GIPC1 protein protein.        55   3e-08
BC000410-1|AAH00410.1|  333|Homo sapiens GIPC PDZ domain contain...    55   3e-08
AF089816-1|AAC67548.1|  333|Homo sapiens RGS-GAIP interacting pr...    55   3e-08
BC117314-1|AAI17315.1|  312|Homo sapiens GIPC PDZ domain contain...    55   4e-08
BC117312-1|AAI17313.1|  312|Homo sapiens GIPC PDZ domain contain...    55   4e-08
AB073738-1|BAB84712.1|  312|Homo sapiens PDZ domain protein GIPC...    55   4e-08
AC005175-1|AAC24304.1|  347|Homo sapiens R31449_1 protein.             54   5e-08
BC036075-1|AAH36075.1|  315|Homo sapiens GIPC PDZ domain contain...    53   2e-07
AB073737-1|BAB84711.1|  315|Homo sapiens PDZ domain protein GIPC...    53   2e-07
D82880-1|BAA11621.1|  853|Homo sapiens human ras GTPase-activati...    27   7.2  
D78155-1|BAA11230.1|  850|Homo sapiens rasGTPase activating prot...    27   7.2  
AF115573-1|AAD09821.1|  849|Homo sapiens GTPase-activating prote...    27   7.2  

>BC016169-1|AAH16169.1|  333|Homo sapiens GIPC PDZ domain
          containing family, member 1 protein.
          Length = 333

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 39 KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          + +LVFH Q AHGSP G I GF+NVKELY KIAE +     ++
Sbjct: 55 RPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEV 97


>BC012810-1|AAH12810.1|  333|Homo sapiens GIPC PDZ domain
          containing family, member 1 protein.
          Length = 333

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 39 KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          + +LVFH Q AHGSP G I GF+NVKELY KIAE +     ++
Sbjct: 55 RPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEV 97


>BC004226-1|AAH04226.2|  300|Homo sapiens GIPC1 protein protein.
          Length = 300

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 39 KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          + +LVFH Q AHGSP G I GF+NVKELY KIAE +     ++
Sbjct: 22 RPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEV 64


>BC000410-1|AAH00410.1|  333|Homo sapiens GIPC PDZ domain
          containing family, member 1 protein.
          Length = 333

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 39 KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          + +LVFH Q AHGSP G I GF+NVKELY KIAE +     ++
Sbjct: 55 RPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEV 97


>AF089816-1|AAC67548.1|  333|Homo sapiens RGS-GAIP interacting
          protein GIPC protein.
          Length = 333

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 39 KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          + +LVFH Q AHGSP G I GF+NVKELY KIAE +     ++
Sbjct: 55 RPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEV 97


>BC117314-1|AAI17315.1|  312|Homo sapiens GIPC PDZ domain
          containing family, member 3 protein.
          Length = 312

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 24/43 (55%), Positives = 31/43 (72%)

Query: 39 KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          + +LVF  Q AHGSP G I GF+NV+ELY KIAE +  +P +I
Sbjct: 34 RPRLVFRTQLAHGSPTGKIEGFTNVRELYAKIAEAFGIAPTEI 76


>BC117312-1|AAI17313.1|  312|Homo sapiens GIPC PDZ domain
          containing family, member 3 protein.
          Length = 312

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 24/43 (55%), Positives = 31/43 (72%)

Query: 39 KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          + +LVF  Q AHGSP G I GF+NV+ELY KIAE +  +P +I
Sbjct: 34 RPRLVFRTQLAHGSPTGKIEGFTNVRELYAKIAEAFGIAPTEI 76


>AB073738-1|BAB84712.1|  312|Homo sapiens PDZ domain protein GIPC3
          protein.
          Length = 312

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 24/43 (55%), Positives = 31/43 (72%)

Query: 39 KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          + +LVF  Q AHGSP G I GF+NV+ELY KIAE +  +P +I
Sbjct: 34 RPRLVFRTQLAHGSPTGKIEGFTNVRELYAKIAEAFGIAPTEI 76


>AC005175-1|AAC24304.1|  347|Homo sapiens R31449_1 protein.
          Length = 347

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 23/43 (53%), Positives = 31/43 (72%)

Query: 39 KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          + +LVF  Q AHGSP G I GF+NV+ELY KIAE +  +P ++
Sbjct: 34 RPRLVFRTQLAHGSPTGKIEGFTNVRELYAKIAEAFGIAPTEV 76


>BC036075-1|AAH36075.1|  315|Homo sapiens GIPC PDZ domain
          containing family, member 2 protein.
          Length = 315

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/41 (53%), Positives = 30/41 (73%)

Query: 41 QLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          +LVFH Q AHGS  G + GFS+++ELY +IA  +E SP +I
Sbjct: 41 RLVFHAQLAHGSATGRVEGFSSIQELYAQIAGAFEISPSEI 81


>AB073737-1|BAB84711.1|  315|Homo sapiens PDZ domain protein GIPC2
          protein.
          Length = 315

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/41 (53%), Positives = 30/41 (73%)

Query: 41 QLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
          +LVFH Q AHGS  G + GFS+++ELY +IA  +E SP +I
Sbjct: 41 RLVFHAQLAHGSATGRVEGFSSIQELYAQIAGAFEISPSEI 81


>D82880-1|BAA11621.1|  853|Homo sapiens human ras GTPase-activating
           protein, Gap1m protein.
          Length = 853

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 25  ESQSNGVDNSNGTQKSQLVFHCQQAHGSPL 54
           E + N +   NGT   QLV H +  HG PL
Sbjct: 156 ELKLNELITENGTVCQQLVVHIKACHGLPL 185


>D78155-1|BAA11230.1|  850|Homo sapiens rasGTPase activating protein
           protein.
          Length = 850

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 25  ESQSNGVDNSNGTQKSQLVFHCQQAHGSPL 54
           E + N +   NGT   QLV H +  HG PL
Sbjct: 156 ELKLNELITENGTVCQQLVVHIKACHGLPL 185


>AF115573-1|AAD09821.1|  849|Homo sapiens GTPase-activating protein
           GAP1m protein.
          Length = 849

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 25  ESQSNGVDNSNGTQKSQLVFHCQQAHGSPL 54
           E + N +   NGT   QLV H +  HG PL
Sbjct: 156 ELKLNELITENGTVCQQLVVHIKACHGLPL 185


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.311    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,248,886
Number of Sequences: 224733
Number of extensions: 295262
Number of successful extensions: 628
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 14
length of query: 81
length of database: 73,234,838
effective HSP length: 59
effective length of query: 22
effective length of database: 59,975,591
effective search space: 1319463002
effective search space used: 1319463002
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)