GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000396-TA|BGIBMGA000396-PA|undefined
         (81 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical p...    57   2e-09
Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical pr...    46   3e-06
AL032632-10|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical...    25   4.8  
U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine rece...    25   6.3  

>U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical
           protein C35D10.2 protein.
          Length = 357

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 22  EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
           E++ S    V N       QL F CQ AHGSP+G+I  ++N++ELY+ IA+C+  S +DI
Sbjct: 43  EESSSTIMTVVNPLMVAARQLKFACQMAHGSPVGIIDKWNNMEELYQSIADCFTISKDDI 102


>Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical
           protein F44D12.4 protein.
          Length = 357

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 22  EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
           E+  S    V N       +L F CQ AHGSP+ +I  +++++ELY+ IA+ +  S +DI
Sbjct: 43  EEPSSSIMPVVNPLMVAAKELKFPCQLAHGSPVAIIDKWNDMEELYQSIADFFAISKDDI 102


>AL032632-10|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 22   EDTESQSNGVDNSNGTQKSQL 42
            ED + +++ ++N N TQKSQ+
Sbjct: 1130 EDVKRKNSKLENENSTQKSQI 1150


>U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine
           receptor, class u protein48 protein.
          Length = 331

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 45  HCQQAHGSPLGLISGFSNVKELYEKIAECYEFSP 78
           +C+Q  GSPLG  S F +  E Y++I     F P
Sbjct: 177 YCRQ-WGSPLGFGSVFISYTETYDEIRHDIFFIP 209


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.311    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,756
Number of Sequences: 27539
Number of extensions: 51511
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 4
length of query: 81
length of database: 12,573,161
effective HSP length: 61
effective length of query: 20
effective length of database: 10,893,282
effective search space: 217865640
effective search space used: 217865640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)