GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000396-TA|BGIBMGA000396-PA|undefined
         (81 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23540.1 68414.m02960 protein kinase family protein contains ...    29   0.29 
At1g60340.1 68414.m06794 apical meristem formation protein-relat...    26   2.7  
At3g01490.1 68416.m00073 protein kinase, putative similar to ATM...    26   3.6  
At5g21060.1 68418.m02508 homoserine dehydrogenase family protein...    25   4.8  
At2g18876.2 68415.m02202 expressed protein                             25   6.3  
At2g18876.1 68415.m02201 expressed protein                             25   6.3  
At1g60300.1 68414.m06790 apical meristem formation protein-relat...    25   6.3  
At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family...    25   8.3  
At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family...    25   8.3  
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil...    25   8.3  

>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 23  DTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAE 72
           +++ Q + + NS GT       H  Q+ G+P   I G       YE++AE
Sbjct: 317 NSQQQQSSMGNSYGTAGGGYPHHQMQSSGTPDSAILGSGQTHFSYEELAE 366


>At1g60340.1 68414.m06794 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 371

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 43  VFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
           + H  +   S  G+++GF  V E YE +   Y    E++
Sbjct: 253 ILHGDKLIKSNFGMVTGFKKVFEFYETVIHRYFCDGEEV 291


>At3g01490.1 68416.m00073 protein kinase, putative similar to
          ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 411

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 22 EDTESQSNGVDNSNGTQKSQLVF-HCQQAHGSPLGLISGFSN 62
          E  +S S+G DN N T+ +Q  F H Q     PL L  G+SN
Sbjct: 39 EKRKSLSDGEDNVNNTRHNQNNFGHRQLVFQRPL-LGGGYSN 79


>At5g21060.1 68418.m02508 homoserine dehydrogenase family protein
           similar to aspartokinase-homoserine dehydrogenase
           [Glycine max] GI:2970447, GI:2970556; contains Pfam
           profile PF00742: Homoserine dehydrogenase
          Length = 376

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 52  SPLGLISGFSNVKELYEKIAECYEFSP 78
           SPLG + G  N+ E+Y +   CY+  P
Sbjct: 324 SPLGRLRGSDNIVEIYSR---CYKEQP 347


>At2g18876.2 68415.m02202 expressed protein
          Length = 284

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 31  VDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
           ++    T+    + +  Q  G   G  SG     + Y+KI + YE   +++
Sbjct: 87  MEKKKETRSGMEIMNLLQKEGRQRGTWSGKKTDSDFYKKIVDAYEAKNQEL 137


>At2g18876.1 68415.m02201 expressed protein
          Length = 382

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 31  VDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
           ++    T+    + +  Q  G   G  SG     + Y+KI + YE   +++
Sbjct: 185 MEKKKETRSGMEIMNLLQKEGRQRGTWSGKKTDSDFYKKIVDAYEAKNQEL 235


>At1g60300.1 68414.m06790 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 322

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 43  VFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 81
           + H  +   S  G + GF  V E YE + + Y    E++
Sbjct: 254 ILHGDKLIKSNFGKVIGFKKVFEFYETVRQIYLCDGEEV 292


>At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family
           protein contains Pfam profiles: PF00393
           6-phosphogluconate dehydrogenase C-terminal domain,
           PF03446 NAD binding domain of 6-phosphogluconate
          Length = 487

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 53  PLGLISGFSNVKELYEKIAECYEFSP 78
           P G  + ++NVK++ EK+A   E  P
Sbjct: 148 PGGSFTAYNNVKDILEKVAAQVEDGP 173


>At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family
           protein contains Pfam profiles: PF00393
           6-phosphogluconate dehydrogenase C-terminal domain,
           PF03446 NAD binding domain of 6-phosphogluconate
          Length = 487

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 53  PLGLISGFSNVKELYEKIAECYEFSP 78
           P G  + ++NVK++ EK+A   E  P
Sbjct: 148 PGGSFTAYNNVKDILEKVAAQVEDGP 173


>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to SP|O14647
           Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
           {Homo sapiens}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00385: 'chromo' (CHRromatin
           Organization MOdifier)
          Length = 1722

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 39  KSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAE 72
           K Q   HCQ    S L  +SGF  V    +K+ E
Sbjct: 469 KGQSHLHCQWKTLSDLQNLSGFKKVLNYTKKVTE 502


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,551,883
Number of Sequences: 28952
Number of extensions: 48630
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 10
length of query: 81
length of database: 12,070,560
effective HSP length: 60
effective length of query: 21
effective length of database: 10,333,440
effective search space: 217002240
effective search space used: 217002240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)