Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000395-TA|BGIBMGA000395-PA|IPR001569|Ribosomal protein
L37e
         (51 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    20   2.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    19   5.0  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    18   8.7  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 19.8 bits (39), Expect = 2.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 30  RRFRNGFKEGKPT 42
           R+F   F+ GKP+
Sbjct: 113 RKFETSFESGKPS 125


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 18.6 bits (36), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 29  RRRFRNGFKEGKPTPPKK 46
           RR  + G K+G PT  +K
Sbjct: 212 RRVKKPGAKQGAPTAEEK 229


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 17.8 bits (34), Expect = 8.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 30  RRFRNGFKEGKPTPPK 45
           +RF  G    KP+ PK
Sbjct: 118 KRFLRGVYRIKPSKPK 133


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,708
Number of Sequences: 317
Number of extensions: 224
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 114,650
effective HSP length: 32
effective length of query: 19
effective length of database: 104,506
effective search space:  1985614
effective search space used:  1985614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.7 bits)
S2: 34 (17.8 bits)