Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000395-TA|BGIBMGA000395-PA|IPR001569|Ribosomal protein
L37e
         (51 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   8e-06
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           26   5.0  

>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6  HWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 51
          +WS+KA          MRHLK+V RRF+NGF+EG +    KK VA++
Sbjct: 2  NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEGTQAKSQKKNVAAA 48


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 28  VRRRFRNGFKEGKPTPPKKAV 48
           +R  FR+ ++EGK TP K ++
Sbjct: 510 LREEFRDSYREGKSTPRKFSI 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,901
Number of Sequences: 59808
Number of extensions: 31707
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 2
length of query: 51
length of database: 16,821,457
effective HSP length: 31
effective length of query: 20
effective length of database: 14,967,409
effective search space: 299348180
effective search space used: 299348180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)