Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000395-TA|BGIBMGA000395-PA|IPR001569|Ribosomal protein
L37e
         (51 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2108|AAF48428.1|   93|Drosophila melanogaster CG9091-PA...    63   5e-11
BT023213-1|AAY55629.1|   89|Drosophila melanogaster IP02962p pro...    39   7e-04
AE013599-3544|AAF46957.1|   89|Drosophila melanogaster CG9873-PA...    39   7e-04

>AE014298-2108|AAF48428.1|   93|Drosophila melanogaster CG9091-PA
          protein.
          Length = 93

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 28/46 (60%), Positives = 32/46 (69%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVAS 50
          Y+WSVKA          M+HLK+VRRRFRNGF+EG    PKKAVAS
Sbjct: 47 YNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92


>BT023213-1|AAY55629.1|   89|Drosophila melanogaster IP02962p
          protein.
          Length = 89

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 39
          ++WS KA          MR+LK +RRRFRNG +EG
Sbjct: 47 FNWSRKAKGRKAQGTGRMRYLKNLRRRFRNGLREG 81


>AE013599-3544|AAF46957.1|   89|Drosophila melanogaster CG9873-PA
          protein.
          Length = 89

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 39
          ++WS KA          MR+LK +RRRFRNG +EG
Sbjct: 47 FNWSRKAKGRKAQGTGRMRYLKNLRRRFRNGLREG 81


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,131
Number of Sequences: 52641
Number of extensions: 50818
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 24,830,863
effective HSP length: 32
effective length of query: 19
effective length of database: 23,146,351
effective search space: 439780669
effective search space used: 439780669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)