GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000395-TA|BGIBMGA000395-PA|IPR001569|Ribosomal protein
L37e
         (51 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    41   2e-05
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    40   5e-05
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    22   8.6  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
          L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPT 42
          Y+W  KA          M +LK V R F+NGF+ GKPT
Sbjct: 47 YNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
          L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 39.5 bits (88), Expect = 5e-05
 Identities = 18/45 (40%), Positives = 22/45 (48%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 49
          Y+W  KA          M +LK V R F+NGF+ GKP     A A
Sbjct: 47 YNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 27  IVRRRFRNGFKEGKPT 42
           I+ +RF N F EG PT
Sbjct: 281 ILPQRFINAFHEGPPT 296


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,922
Number of Sequences: 5004
Number of extensions: 4207
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 2,362,478
effective HSP length: 32
effective length of query: 19
effective length of database: 2,202,350
effective search space: 41844650
effective search space used: 41844650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)