GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000395-TA|BGIBMGA000395-PA|IPR001569|Ribosomal protein
L37e
         (51 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    44   2e-05
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    43   3e-05
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    42   5e-05

>02_01_0089 +
          633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 4  EYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 51
          +Y+WSVKA          MR+++ V RRF++ F+EG    P+K  A++
Sbjct: 46 KYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 4   EYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 49
           +Y+WSVKA          MR+++ V RRF++ F+EG    P+K  A
Sbjct: 67  KYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAA 112


>02_05_1204 +
          34936696-34936698,34936809-34936944,34937794-34937895,
          34938153-34938199
          Length = 95

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 4  EYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 51
          +Y+WSVKA          MR+L+ V +RF++ F+EG    P+K  A++
Sbjct: 46 KYNWSVKAIRRKTTGTGRMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,522
Number of Sequences: 37544
Number of extensions: 30885
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 14,793,348
effective HSP length: 32
effective length of query: 19
effective length of database: 13,591,940
effective search space: 258246860
effective search space used: 258246860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)