GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000395-TA|BGIBMGA000395-PA|IPR001569|Ribosomal protein
L37e
         (51 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    40   3e-04
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    36   0.003
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    25   4.9  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
          protein W01D2.1 protein.
          Length = 92

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPK 45
          Y+W  K+           RHL+ V  RFRNGF+EG    P+
Sbjct: 47 YNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFREGTTPKPR 87


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
          protein C54C6.1 protein.
          Length = 91

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTP 43
          Y+W  K+           RHL+ V  RFRNGF+   P P
Sbjct: 47 YNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGTTPKP 85


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 26   KIVRRRFRNGFKEGKPTPP 44
            +++R  FR G   GKPT P
Sbjct: 1067 EVLRSSFRRGINAGKPTKP 1085


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,053
Number of Sequences: 27539
Number of extensions: 24604
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 12,573,161
effective HSP length: 32
effective length of query: 19
effective length of database: 11,691,913
effective search space: 222146347
effective search space used: 222146347
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)