GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000395-TA|BGIBMGA000395-PA|IPR001569|Ribosomal protein
L37e
         (51 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi...    46   2e-06
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi...    46   4e-06
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo...    44   9e-06
At5g64260.1 68418.m08073 phosphate-responsive protein, putative ...    26   3.5  

>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B)
          similar to SP:Q43292 from [Arabidopsis thaliana]
          Length = 95

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPK-KAVASS 51
          Y+WSVKA          MR+L+ V RRF+ GF+EG    P+ K VASS
Sbjct: 47 YNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASS 94


>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C)
          similar to ribosomal protein L37 GB:BAA04888 from [Homo
          sapiens]
          Length = 95

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPK-KAVASS 51
          Y+WSVKA          MR+L+ V RRF+ GF+EG    P+ KA ASS
Sbjct: 47 YNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKASASS 94


>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A)
          almost identical to GB:Q43292
          Length = 95

 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 5  YHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 51
          Y+WSVKA          MR+L+ V RRF+  F+EG + TP  KA ASS
Sbjct: 47 YNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQATPRNKAAASS 94


>At5g64260.1 68418.m08073 phosphate-responsive protein, putative
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 305

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 28  VRRRFRNGFKEGKPTPPKKAVAS 50
           V   F NG+ +G PT P +AV++
Sbjct: 229 VTNPFNNGYYQGPPTAPLEAVSA 251


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,088,644
Number of Sequences: 28952
Number of extensions: 22938
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 4
length of query: 51
length of database: 12,070,560
effective HSP length: 32
effective length of query: 19
effective length of database: 11,144,096
effective search space: 211737824
effective search space used: 211737824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)