Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000394-TA|BGIBMGA000394-PA|IPR004130|Protein of unknown
function, ATP binding, IPR010760|Protein of unknown function DUF1337
         (356 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.9  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   5.9  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   5.9  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   5.9  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 277  GQLRKSEKHQMSKSNREIYNKLIE 300
            G L + E H ++++    +N+LIE
Sbjct: 1178 GPLIRGEVHYLNRNEETFWNELIE 1201


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 277  GQLRKSEKHQMSKSNREIYNKLIE 300
            G L + E H ++++    +N+LIE
Sbjct: 1178 GPLIRGEVHYLNRNEETFWNELIE 1201


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 259 LVDKANGYVFKTEEDILKGQLRKSEKHQMSKSN-REIYNKLIEIEMRID 306
           L+  A  Y F    D  +       K + +  N RE YN+L  +  R+D
Sbjct: 236 LLSTALAYRFTQVTDRTQSMSESKNKSESAWKNLREDYNRLCRLCKRVD 284


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 259 LVDKANGYVFKTEEDILKGQLRKSEKHQMSKSN-REIYNKLIEIEMRID 306
           L+  A  Y F    D  +       K + +  N RE YN+L  +  R+D
Sbjct: 236 LLSTALAYRFTQVTDRTQSMSESKNKSESAWKNLREDYNRLCRLCKRVD 284


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 259 LVDKANGYVFKTEEDILKGQLRKSEKHQMSKSN-REIYNKLIEIEMRID 306
           L+  A  Y F    D  +       K + +  N RE YN+L  +  R+D
Sbjct: 236 LLSTALAYRFTQVTDRTQSMSESKNKSESAWKNLREDYNRLCRLCKRVD 284


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,257
Number of Sequences: 317
Number of extensions: 2820
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 356
length of database: 114,650
effective HSP length: 58
effective length of query: 298
effective length of database: 96,264
effective search space: 28686672
effective search space used: 28686672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)