GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000394-TA|BGIBMGA000394-PA|IPR004130|Protein of unknown
function, ATP binding, IPR010760|Protein of unknown function DUF1337
         (356 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   1.00 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   5.3  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 25.0 bits (52), Expect = 1.00
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 36  LKTLGRQVIIVNLDPANDTMNYKPDIDIRELIVLEEVMEQI 76
           L+ LGR+ I+VN +P  +T++   D D+ + +  EE+  ++
Sbjct: 407 LRNLGRKTIMVNYNP--ETVS--TDYDMSDRLYFEEISFEV 443


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 231 ISIIEDYSLVTFQLVNMMNEKSLASVKNLVDKANGYVFKTEEDILKGQLRKSEK 284
           I  I  + LV    V+  +   L  ++++  + NG   K  +D+ KG   K+++
Sbjct: 4   IIFIFAFCLVGILAVSEESINKLRKIESVCAEENGIDLKKADDVKKGIFDKNDE 57


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,794
Number of Sequences: 429
Number of extensions: 3676
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 356
length of database: 140,377
effective HSP length: 58
effective length of query: 298
effective length of database: 115,495
effective search space: 34417510
effective search space used: 34417510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)