Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000393-TA|BGIBMGA000393-PA|IPR002035|von Willebrand
factor, type A
         (366 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)                 32   0.85 
SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   6.0  

>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
          Length = 792

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 14  YDNNVVSIEENLPPDIKTLTTQKTVINKRSAGIGEWAFR--RTVAILIKGSRTQRKDEGD 71
           Y +++   E      I++LT     +N   A + EWA R  +T AIL+ G    R  E D
Sbjct: 674 YADDITITESAHYSKIQSLTVS---LNNDLAAVDEWASRNAKTKAILVTGKWIGRNVEKD 730

Query: 72  IEISTHMKFNNERWETLNSY 91
             +   +K  +   E ++SY
Sbjct: 731 PPLCLDLKIGDSMIEEISSY 750


>SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 95   DEPFSEETFRRVLGYIEGAIYKPTIVEETIMAWNEYVHTFL 135
            D+ FS+ T RR + YIE  + +   ++   + W+EYV + L
Sbjct: 1111 DKTFSDYTARRFVPYIEAQLQQAKRID---LVWDEYVESSL 1148


>SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 161 WSECEAP--KPDLLTFYKHMDPLKIAV 185
           W + E P  KP L TFYKH+  L + V
Sbjct: 139 WPDAEVPAFKPALQTFYKHLSTLGLRV 165


>SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 539

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 299 CARALDTAASNNR-----QRPALQMNAVQSTSQIRRSASTGRLP-SLNISKESCSNFSNN 352
           C +   T A N       QR +L ++   +  +  +S  + ++P  LN+  +SC+N   N
Sbjct: 106 CKKTFKTIADNGSKSLEIQRSSLNLSHANNKREAHKSVVSKKVPPQLNLEVDSCNNSLEN 165

Query: 353 DRKN 356
           D  N
Sbjct: 166 DYGN 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,664,872
Number of Sequences: 59808
Number of extensions: 380515
Number of successful extensions: 918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 4
length of query: 366
length of database: 16,821,457
effective HSP length: 83
effective length of query: 283
effective length of database: 11,857,393
effective search space: 3355642219
effective search space used: 3355642219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)