GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000393-TA|BGIBMGA000393-PA|IPR002035|von Willebrand
factor, type A
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    30   0.59 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   0.78 
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   5.5  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   7.3  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   7.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   9.7  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 20/84 (23%), Positives = 34/84 (40%)

Query: 139  KEAEQKEFETFLSAIQKCKWQFWSECEAPKPDLLTFYKHMDPLKIAVRMFSVLISEPMII 198
            KE ++KE++     I+KC     S     K D +T  +  +     +  F  L+S     
Sbjct: 1107 KELKEKEYKRLKGVIEKCLSSVASRINQIKCDWVTDPEKFESCTSEISKFRTLLSSDYTE 1166

Query: 199  TCDTVNTILLGITDGLYFPLNKIV 222
                 ++I L  +   Y  LN I+
Sbjct: 1167 LYSEFDSIYLNSSTSDYLSLNSIL 1190


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 315 ALQMNAVQSTSQIRRSASTGRLPSLNISKESCSNFSNNDRKNKFSINASG 364
           AL  N++ S++    SAST  +PS + S E  SN S+   +   SI ASG
Sbjct: 563 ALSSNSLSSSTS---SASTSYIPSASSSYEVASNSSDYYSQTVSSITASG 609


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 75  STHMKFNNERWETLN--SYLESDEPFSEETFRRV-LGYIEGAIYKPTIVEETIMAWNEYV 131
           S   K   ER+ET +  S + S   +S  TF  + +  I   I     +E+++    E +
Sbjct: 690 SKKKKDKGERFETKDKSSSVLSPSSYSASTFDAIPMDSIVSNILAS--LEKSVHKNYESL 747

Query: 132 HTFLIEYKEAEQKEFETFLSAI 153
            + L+EYK A +K  E  LS +
Sbjct: 748 RSQLLEYKAANEKHTEAILSVV 769


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 307 ASNNRQRPALQMNAVQSTSQIRRSASTGRLPSLNISKESCSNFSNNDRKNKFSINAS 363
           + NN Q+     +++Q  +    ++S+G     N +  +  N+ NN+ +N  + N S
Sbjct: 579 SGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQNYNNNNNS 635


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 305 TAASNNRQRPALQMNAVQSTSQIRRSASTGRLPSLNISKES 345
           T     R RP    N   ++S IR S +   LPSL IS  S
Sbjct: 482 TLLPRKRGRPRKSANISVTSSPIRPSKNENNLPSLAISPVS 522


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 62  SRTQRKDEGDIEISTHMKFNNERWETLNSYLESDEPFSEETFRRVLGYIEGAIYKPTIVE 121
           S  ++  +G++ +S + K  +E WE     L +     +E   RV    E  +++  ++E
Sbjct: 3   SLPEKDQQGEVSVSENQKKLSEEWEPYIDKLVASNRTRDE---RVESIQE--LFQKCVIE 57

Query: 122 ETIMAWNEYVHTFLIEYKEAEQKEFETFLSAIQKCKWQFWSE 163
           E +   + +   F + ++  E+K   T  S +    W F +E
Sbjct: 58  EKLPV-DIFFSIFSLAFERLEEK--NTLASYVIDTLWLFDTE 96


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,190
Number of Sequences: 5004
Number of extensions: 56691
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 7
length of query: 366
length of database: 2,362,478
effective HSP length: 74
effective length of query: 292
effective length of database: 1,992,182
effective search space: 581717144
effective search space used: 581717144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)