GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000393-TA|BGIBMGA000393-PA|IPR002035|von Willebrand
factor, type A
         (366 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78539-6|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    30   3.0  
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    29   4.0  
Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    29   6.9  

>Z78539-6|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
           protein C31E10.8 protein.
          Length = 1272

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 121 EETIMAWNEYVHTFLIEYKEAEQKEFETFL-SAIQKCKWQFWSECEAPKPDL-LTFYKHM 178
           EE+  AW   +HTF   Y EAE+ +++      I+K       E      D  + F KH 
Sbjct: 26  EESCRAW---LHTFCNRYSEAERTKYQMMTHRKIKKASSLPDQESTTAATDQHIPFRKHS 82

Query: 179 DPLKIAVRMFSVLISEPMIITCDTVNTILLGITDGLYFP 217
            P +  V   + ++  P I  C   +     I +  YFP
Sbjct: 83  VPAQNLVTTRNFIMPPPDIAVCFFFSRFFFKI-ETTYFP 120


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans homeobox
            protein 44,isoform a protein.
          Length = 1273

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 304  DTAASNNRQRPALQMNAVQSTSQIRRSASTGRLPSL 339
            D+  +NN   P    +   +TS +++ +STG+L +L
Sbjct: 1219 DSPTNNNYSSPIFSFDKASTTSTVKKPSSTGKLDNL 1254


>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/66 (24%), Positives = 39/66 (59%), Gaps = 10/66 (15%)

Query: 67  KDEG------DIEISTHMKFNNER-WETLNSYLE---SDEPFSEETFRRVLGYIEGAIYK 116
           KDEG      D  +  ++K +N++ W +++ ++    +   +SEET++ ++G I G +Y+
Sbjct: 42  KDEGVWTASDDRSVRLYLKRDNDQFWPSIHHFMPVAPTSLYYSEETYKLLVGLINGNVYE 101

Query: 117 PTIVEE 122
            ++ ++
Sbjct: 102 FSVADD 107


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 311 RQRPALQMNAVQSTS--QIRRSASTGRLPSLNISKESCSNFSNNDRKNKFSINAS 363
           R++ +L    ++S+S      S ST  +P  N+S+  C N+S N  K  FS  +S
Sbjct: 522 REQMSLSSYELRSSSGHSTLSSLSTSSMPD-NMSEIPCKNYSTNSMKTAFSNGSS 575


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,997,151
Number of Sequences: 27539
Number of extensions: 305601
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 4
length of query: 366
length of database: 12,573,161
effective HSP length: 82
effective length of query: 284
effective length of database: 10,314,963
effective search space: 2929449492
effective search space used: 2929449492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)