GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000393-TA|BGIBMGA000393-PA|IPR002035|von Willebrand
factor, type A
         (366 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   9.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 326 QIRRSASTGRLPSLNISKES 345
           Q +R+ + GRL S N+SK+S
Sbjct: 242 QKKRTRAEGRLSSDNMSKKS 261


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 13/67 (19%), Positives = 29/67 (43%)

Query: 49  WAFRRTVAILIKGSRTQRKDEGDIEISTHMKFNNERWETLNSYLESDEPFSEETFRRVLG 108
           + +  +VA++ +      K     E+  H+ FN+E  +   +    D    ++T+  +  
Sbjct: 138 YLYALSVAVIHRPDTKLMKLPPMYEVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNIDY 197

Query: 109 YIEGAIY 115
           Y+  A Y
Sbjct: 198 YLLAANY 204


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,307
Number of Sequences: 429
Number of extensions: 3657
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 366
length of database: 140,377
effective HSP length: 59
effective length of query: 307
effective length of database: 115,066
effective search space: 35325262
effective search space used: 35325262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)