GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000393-TA|BGIBMGA000393-PA|IPR002035|von Willebrand
factor, type A
         (366 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00710.1 68417.m00097 protein kinase family protein low simil...    32   0.70 
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    28   8.6  

>At4g00710.1 68417.m00097 protein kinase family protein low
           similarity to protein kinase [Arabidopsis thaliana]
           GI:2852449; contains Pfam profile: PF00069 Protein
           kinase domain
          Length = 489

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 46  IGEWAFRR--TVAILIKGSRTQRKDEGDI-EISTHMKFNNERWETLNSYLESDEPFSEET 102
           +GE   RR  T  + I      + DEG   E+S HM + ++  E+LNS  + D  F ++ 
Sbjct: 338 LGEACSRRDLTAMLEILEKLGYKDDEGVTNELSFHM-WTDQMQESLNSKKKGDVAFRQKD 396

Query: 103 FRRVL----GYIEGAIYKPTI 119
           FR  +     +I+G +  PT+
Sbjct: 397 FREAIECYTQFIDGGMISPTV 417


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
           identical to P-glycoprotein GI:3849833 from [Arabidopsis
           thaliana]; homologous to mammalian mdr gene,contains
           ATP-binding cassette; related to multi drug resistance
           proteins
          Length = 1286

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 294 RLLDVCARALDTAASNNRQ---RPALQMNAVQSTSQIRRSASTGRLP-SLNISKESCSNF 349
           +L+ +   A +TA SN R+   RP+   N+V S    R S S GR P S  +S  S S+F
Sbjct: 602 KLIKMQEAAHETAMSNARKSSARPSSARNSVSSPIMTRNS-SYGRSPYSRRLSDFSTSDF 660

Query: 350 S 350
           S
Sbjct: 661 S 661


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,484,930
Number of Sequences: 28952
Number of extensions: 281553
Number of successful extensions: 764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 2
length of query: 366
length of database: 12,070,560
effective HSP length: 82
effective length of query: 284
effective length of database: 9,696,496
effective search space: 2753804864
effective search space used: 2753804864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)