Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000392-TA|BGIBMGA000392-PA|undefined
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   9.0  
SB_2352| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 223 TLKAEISKSDGSTCGTVECDTEGSESPGDEEGTVTASTG 261
           +++ EI+ +D  T     CDT GS  PG     +T + G
Sbjct: 506 SIRVEIANNDSDTSSVGTCDTTGSPVPGMPSSKMTYTGG 544


>SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 54  GTTGDFSPVVRATCKTGVMSIKIN--FNQPFYGVAHAREYRTPSCMALGNG 102
           GTT DF P +      G++ IK N  F   F+ +     Y  P+   L NG
Sbjct: 21  GTTIDFPPPMGVRFTIGLLDIKFNCGFTGEFFEIDATDFYLEPNARLLCNG 71


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 8   IISLTTVRLENNLVERKVDFVVYNVHASFTVYTNSFQSNIFIQNTEGTTGDFSPVVRAT 66
           I+   TV +EN   + + D +    HA+ T Y      N+ +   E  TGD S +VR T
Sbjct: 420 IVDTPTVVMENQTDQYEFDEMQVEGHATVTFYHPQGVRNVTVIAHE-VTGDKSGIVRLT 477


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 219  GMPYTLKAEISKSDGSTCGTVECDTEGSE----SPGDEEGTVTAST 260
            G P  L   I      TCGTV+C++  SE    + G ++G V A T
Sbjct: 2204 GCPPKLLNFIKSFHEGTCGTVKCESNSSEAFDINTGVKQGCVLAPT 2249


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 13  TVRLENNLVERKVDFVVYNVHASFTVYTNSFQSNIFIQNTEGTTGDFSPVVRATCKTGVM 72
           TVRL N LVE++++   ++ +AS   +++  Q +   +N     G F     +  +    
Sbjct: 536 TVRLNNTLVEKRIENTKHDKNASVKNHSHK-QGSFGSKNLSHKQGSFGSKNLSNKQGSFG 594

Query: 73  SIKINFNQPFYG 84
           S  ++  Q F+G
Sbjct: 595 SKNLSHKQGFFG 606


>SB_2352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 92  RTPSCMALGNGTESLNFDINLIAPQGSPDHCGVFWNNRTDERSLPLAVRVHRTLEL 147
           R  + M L  GT S    I + A +GS DH  +  N++T E  +P +  V   LEL
Sbjct: 30  RKNTMMTLKQGTRSPE-PIKVTA-EGSTDHKPIIINSKTSEEVVPKSEAVISNLEL 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,968,658
Number of Sequences: 59808
Number of extensions: 457497
Number of successful extensions: 1131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 6
length of query: 324
length of database: 16,821,457
effective HSP length: 82
effective length of query: 242
effective length of database: 11,917,201
effective search space: 2883962642
effective search space used: 2883962642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)