Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000392-TA|BGIBMGA000392-PA|undefined
(324 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 31 7.2
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 7.2
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 7.2
AL445650-3|CAH70620.1| 1546|Homo sapiens Usher syndrome 2A (auto... 31 7.2
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 7.2
AL358858-1|CAH71587.1| 1546|Homo sapiens Usher syndrome 2A (auto... 31 7.2
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 7.2
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 7.2
AF091889-1|AAF75819.1| 1546|Homo sapiens Usher syndrome type IIa... 31 7.2
AF055580-1|AAC23748.2| 1546|Homo sapiens Usher syndrome type IIa... 31 7.2
Y10388-1|CAA71414.2| 759|Homo sapiens Graf protein protein. 30 9.6
BC068555-1|AAH68555.1| 759|Homo sapiens ARHGAP26 protein protein. 30 9.6
AF141884-1|AAD39482.1| 814|Homo sapiens oligophrenin-1 like pro... 30 9.6
AB014521-1|BAA31596.1| 753|Homo sapiens KIAA0621 protein protein. 30 9.6
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform
B protein.
Length = 5202
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>AL445650-3|CAH70620.1| 1546|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 1546
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>AL358858-1|CAH71587.1| 1546|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 1546
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>AF091889-1|AAF75819.1| 1546|Homo sapiens Usher syndrome type IIa
protein protein.
Length = 1546
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>AF055580-1|AAC23748.2| 1546|Homo sapiens Usher syndrome type IIa
protein protein.
Length = 1546
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 232 DGSTCGTVECDTEGSESPGDEEGTVTASTGVFVLDPNDNTIAAMSCMEGN 281
D + C +CDT GS PG A TG + PN C+EGN
Sbjct: 788 DVTNCKACDCDTAGS-LPGT---VCNAKTGQCICKPNVEGRQCNKCLEGN 833
>Y10388-1|CAA71414.2| 759|Homo sapiens Graf protein protein.
Length = 759
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 222 YTLKAEISKSDGSTCGTVECDTEGSESPGDEEGTVTASTGV 262
Y KAE T GTV + S+ PG EGT+ TG+
Sbjct: 710 YACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGL 750
>BC068555-1|AAH68555.1| 759|Homo sapiens ARHGAP26 protein protein.
Length = 759
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 222 YTLKAEISKSDGSTCGTVECDTEGSESPGDEEGTVTASTGV 262
Y KAE T GTV + S+ PG EGT+ TG+
Sbjct: 710 YACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGL 750
>AF141884-1|AAD39482.1| 814|Homo sapiens oligophrenin-1 like
protein protein.
Length = 814
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 222 YTLKAEISKSDGSTCGTVECDTEGSESPGDEEGTVTASTGV 262
Y KAE T GTV + S+ PG EGT+ TG+
Sbjct: 765 YACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGL 805
>AB014521-1|BAA31596.1| 753|Homo sapiens KIAA0621 protein protein.
Length = 753
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 222 YTLKAEISKSDGSTCGTVECDTEGSESPGDEEGTVTASTGV 262
Y KAE T GTV + S+ PG EGT+ TG+
Sbjct: 704 YACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGL 744
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,228,499
Number of Sequences: 224733
Number of extensions: 1991853
Number of successful extensions: 3824
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3820
Number of HSP's gapped (non-prelim): 14
length of query: 324
length of database: 73,234,838
effective HSP length: 90
effective length of query: 234
effective length of database: 53,008,868
effective search space: 12404075112
effective search space used: 12404075112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)
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