Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000392-TA|BGIBMGA000392-PA|undefined
         (324 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.67 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.89 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 163 KNSRYGFDMYSFVQCNTVTLRSTMRKTMLKNNRNETSLVS 202
           K S   FD  S ++ NTVT +  M   MLKN  ++  ++S
Sbjct: 371 KISNLSFDKQSLLKENTVTCQEAMH--MLKNADSQLLVIS 408


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 124 VFWNNRTDERSLPLAVRVHRTLELADDKF 152
           +F   + DER LP   R  + L +  DKF
Sbjct: 503 IFIGPKEDERGLPFTFREQKNLMIELDKF 531


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 272 IAAMSCMEGNVRPLWLLYLAIALGVMFL-VMLLINCFLCTAM 312
           +A  +C+  +++ +WL     +L V  L + LL++ F C  +
Sbjct: 576 LAGATCLGSSIKAMWLRRALASLMVFSLGLFLLLDMFNCVVV 617


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,353
Number of Sequences: 429
Number of extensions: 4413
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 324
length of database: 140,377
effective HSP length: 58
effective length of query: 266
effective length of database: 115,495
effective search space: 30721670
effective search space used: 30721670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)