GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000392-TA|BGIBMGA000392-PA|undefined
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    29   6.7  

>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
            26449505-26449606,26449696-26449788,26449934-26450181,
            26451088-26451274,26451825-26452043,26452464-26452660,
            26453545-26453875,26454099-26454457,26455141-26455240,
            26455349-26455464,26455547-26455663,26455782-26455880,
            26456057-26456131,26456205-26456286,26457724-26457763,
            26458685-26458769,26458924-26459055
          Length = 1303

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 237  GTVECDTEGSESPGDEEGTVTAST 260
            G VE  TE + +PG+ EGT  A+T
Sbjct: 1215 GNVEATTEPAAAPGNVEGTAAAAT 1238


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,175,547
Number of Sequences: 37544
Number of extensions: 382801
Number of successful extensions: 758
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 1
length of query: 324
length of database: 14,793,348
effective HSP length: 82
effective length of query: 242
effective length of database: 11,714,740
effective search space: 2834967080
effective search space used: 2834967080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)