Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000392-TA|BGIBMGA000392-PA|undefined
(324 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024831-2|AAN63422.1| 502|Caenorhabditis elegans Hypothetical ... 50 2e-06
AC024831-1|AAN63421.1| 500|Caenorhabditis elegans Hypothetical ... 50 2e-06
AF016420-5|AAB65309.1| 651|Caenorhabditis elegans Na/ca exchang... 32 0.63
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr... 31 1.1
U58752-1|AAB00664.1| 377|Caenorhabditis elegans P38 map kinase ... 31 1.5
U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical pr... 31 1.5
U58729-2|AAM54203.1| 913|Caenorhabditis elegans Hypothetical pr... 31 1.5
U58729-1|AAM54202.1| 928|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF456360-1|AAL60231.1| 928|Caenorhabditis elegans immunoglobuli... 31 1.5
AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical ... 29 3.4
Z81456-2|CAB03811.1| 317|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z66496-5|CAA91280.2| 507|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 28 7.8
>AC024831-2|AAN63422.1| 502|Caenorhabditis elegans Hypothetical
protein Y55F3C.7b protein.
Length = 502
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Query: 47 IFIQNTEGTTGDFSPVVRATCKTGVMSIKINFNQPFYGVAHAREYRTPSCMALGNGTESL 106
I + G F VR +C V+S+ I ++PF G+ R + +C G GT
Sbjct: 13 IVLPLVSGALSVFESDVRWSCSEDVVSVFIRTSKPFEGLVQTRSSESEACRVQGFGTNVA 72
Query: 107 NFDINLIAPQGSPDHCGVFWNNRTDERSLPLAVRVHRTLELADDKFYVITCGKAGFKNSR 166
+NL D CG+ ++ + S+ + V H L + DK +TC +
Sbjct: 73 VLKLNL-----KSDECGIKYDVASKTYSVTVDVHSHPVLIVEGDKSVNVTCREIANGTQH 127
Query: 167 YGFDMYS 173
Y M S
Sbjct: 128 YASQMTS 134
>AC024831-1|AAN63421.1| 500|Caenorhabditis elegans Hypothetical
protein Y55F3C.7a protein.
Length = 500
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Query: 47 IFIQNTEGTTGDFSPVVRATCKTGVMSIKINFNQPFYGVAHAREYRTPSCMALGNGTESL 106
I + G F VR +C V+S+ I ++PF G+ R + +C G GT
Sbjct: 13 IVLPLVSGALSVFESDVRWSCSEDVVSVFIRTSKPFEGLVQTRSSESEACRVQGFGTNVA 72
Query: 107 NFDINLIAPQGSPDHCGVFWNNRTDERSLPLAVRVHRTLELADDKFYVITCGKAGFKNSR 166
+NL D CG+ ++ + S+ + V H L + DK +TC +
Sbjct: 73 VLKLNL-----KSDECGIKYDVASKTYSVTVDVHSHPVLIVEGDKSVNVTCREIANGTQH 127
Query: 167 YGFDMYS 173
Y M S
Sbjct: 128 YASQMTS 134
>AF016420-5|AAB65309.1| 651|Caenorhabditis elegans Na/ca exchangers
protein 9 protein.
Length = 651
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 188 KTMLKNNRNETSLVSLRMLDDQGRKVLNVGFGMPYTLKAEISKSDGSTCGTVECDTEGSE 247
K + + N T+ + ++ R ++N+GF PY++ +E S T E D E E
Sbjct: 267 KNLTRANLKRTTNNNNNDNKNEKRGIVNLGFSEPYSIPSERKISTIFKQNTFETDLESLE 326
Query: 248 SPGDEEGT 255
S D +G+
Sbjct: 327 SLADLDGS 334
>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical protein
F54F2.1 protein.
Length = 1226
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 274 AMSCMEGNVRPLWLLYLAIALGVMFLVMLLINCFLC 309
A++ EG P WL LAI +G+ L++L++ + C
Sbjct: 1144 AIASEEGRDLPWWLYLLAILIGLAILILLILLLWRC 1179
>U58752-1|AAB00664.1| 377|Caenorhabditis elegans P38 map kinase
family protein 1 protein.
Length = 377
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 46 NIFIQNTEGTTGDFSPVVRATCKTGVMSIKIN-FNQPFYGVAHA----REYRTPSCMALG 100
N +I T TG + V A C + I FN+PF + HA RE R CM
Sbjct: 33 NYYINLTPIGTGAYGTVCAAECTRSGTRVAIKKFNRPFQSIIHARRTYRELRLLRCMCHE 92
Query: 101 N 101
N
Sbjct: 93 N 93
>U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical
protein F02G3.1c protein.
Length = 955
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 4/33 (12%)
Query: 288 LYLAIALGVMFLVMLL-INCFL---CTAMTCSC 316
L +AIA+GV+FL++L+ + CF+ C ++C C
Sbjct: 889 LIIAIAIGVLFLLLLVDLGCFITNKCGLISCIC 921
>U58729-2|AAM54203.1| 913|Caenorhabditis elegans Hypothetical
protein F02G3.1b protein.
Length = 913
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 4/33 (12%)
Query: 288 LYLAIALGVMFLVMLL-INCFL---CTAMTCSC 316
L +AIA+GV+FL++L+ + CF+ C ++C C
Sbjct: 862 LIIAIAIGVLFLLLLVDLGCFITNKCGLISCIC 894
>U58729-1|AAM54202.1| 928|Caenorhabditis elegans Hypothetical
protein F02G3.1a protein.
Length = 928
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 4/33 (12%)
Query: 288 LYLAIALGVMFLVMLL-INCFL---CTAMTCSC 316
L +AIA+GV+FL++L+ + CF+ C ++C C
Sbjct: 862 LIIAIAIGVLFLLLLVDLGCFITNKCGLISCIC 894
>AF456360-1|AAL60231.1| 928|Caenorhabditis elegans immunoglobulin
domain-containingprotein F02G3.1 protein.
Length = 928
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 4/33 (12%)
Query: 288 LYLAIALGVMFLVMLL-INCFL---CTAMTCSC 316
L +AIA+GV+FL++L+ + CF+ C ++C C
Sbjct: 862 LIIAIAIGVLFLLLLVDLGCFITNKCGLISCIC 894
>AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical
protein F53C3.6a protein.
Length = 250
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 39 YTNSFQSNIFIQNTEGTTGDFSPVVRATCKTGVMSIKINFNQPFYGVAH 87
Y++SF+ N+F ++ T FSP+ R S I N +Y H
Sbjct: 77 YSSSFRQNVFHTSSTSRTFVFSPMTRTIVIISPASPMIYENNHYYWAGH 125
>Z81456-2|CAB03811.1| 317|Caenorhabditis elegans Hypothetical
protein B0462.3 protein.
Length = 317
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 107 NFDINLIAPQGSPDHCGVFWNNRTDERSLPLAVRVHRTLELADDKFYVITCGKAGFKNSR 166
N +I +I PQ H V + ERS + R+ E +D+K + IT G F
Sbjct: 50 NAEIRIILPQHPEIHISVGSMSAVLERSAANVRIIDRSRENSDEKTFDITSGCLNFTERD 109
Query: 167 Y 167
Y
Sbjct: 110 Y 110
>Z66496-5|CAA91280.2| 507|Caenorhabditis elegans Hypothetical
protein E04D5.3 protein.
Length = 507
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 67 CKTGVMSIKINFNQPFYGVAHAREYRT-PSCMALGNGTESLNFDI 110
C+T +S+ F G + Y + PSCM +G+G F++
Sbjct: 43 CETASISLLFKTRNSFNGKVFVKGYVSEPSCMTVGDGKTGHRFEV 87
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 184 STMRKTMLKNNRNETSLVSLRMLDDQGRKVLNVGFGMPYTLKAEISKSDGSTC---GTVE 240
ST+ ++ + ++++ + ++ G T ++ + S GST T+
Sbjct: 858 STVSQSTSSSTTGQSTVSESSVSTVSSESTISQSTGSTTTGESTVFGSTGSTATGSSTMS 917
Query: 241 CDTEGSESPGDEEGTVTAST 260
T +++PG E T+T ST
Sbjct: 918 ASTGSTDTPGSTESTITGST 937
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,109,039
Number of Sequences: 27539
Number of extensions: 351471
Number of successful extensions: 833
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 18
length of query: 324
length of database: 12,573,161
effective HSP length: 82
effective length of query: 242
effective length of database: 10,314,963
effective search space: 2496221046
effective search space used: 2496221046
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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