GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000392-TA|BGIBMGA000392-PA|undefined
         (324 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03480.1 68417.m00475 ankyrin repeat family protein contains ...    33   0.34 
At3g48470.1 68416.m05291 expressed protein                             29   4.2  
At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease fami...    29   5.6  
At4g09930.1 68417.m01626 avirulence-responsive family protein / ...    28   7.4  
At5g48540.1 68418.m06001 33 kDa secretory protein-related contai...    28   9.7  
At2g31140.1 68415.m03802 expressed protein                             28   9.7  

>At4g03480.1 68417.m00475 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 617

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 196 NETSLVSLRMLDDQGRKVLNVGFGMPYTLKAEISKSDGSTCGTVECDTEGS 246
           ++ SLV+ R  D++GR  L+VG  M Y  K      D ST    ECD +GS
Sbjct: 336 DDPSLVNER--DEEGRTCLSVGASMGY-YKGICKLLDRSTKSVYECDKDGS 383


>At3g48470.1 68416.m05291 expressed protein
          Length = 1017

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 238 TVECDTEGSESPGDEEGTVTA-STGVFVLDPND 269
           T+ CDTE  +  GD++ +V++ ++ V  L+P D
Sbjct: 576 TLNCDTESDKDDGDDDASVSSDNSSVTSLEPYD 608


>At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease family
           protein contains Pfam profile PF00860: Permease family
          Length = 530

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 223 TLKAEISKSDGSTCGTVECDTEGSESPGDEEGTVTASTG 261
           T+ A I    G+TC   +C T  S SP   E  + ++ G
Sbjct: 59  TVNANILADSGATCSINDCSTVASSSPPGPECVLGSNPG 97


>At4g09930.1 68417.m01626 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana];  contains
           Pfam PF04548: AIG1 family;
          Length = 335

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 224 LKAEISKSDGSTCG-TVECDTEGSESPGDEEGTVTASTGVFVLDP-NDNTI 272
           L++E  KS G     T EC+ + ++ P  +   V  + G+F L P N++TI
Sbjct: 47  LRSEAFKSKGQAAAVTKECELKSTKRPNGQIINVIDTPGLFSLFPSNESTI 97


>At5g48540.1 68418.m06001 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 263

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 302 LLINCFLCTAMTCSCARTDVLY 323
           L++ CFL  A+ CSC   D ++
Sbjct: 4   LVVKCFLLLALVCSCRAADSIW 25


>At2g31140.1 68415.m03802 expressed protein
          Length = 205

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 132 ERSLPLAVRVHRTLELADDKFYVITC-----GKAGFKNSRYGFDMYSFVQCNTVTLRSTM 186
           E SL L+++ HR+ +L+D +   I C     GK  + +S  G +M   +  N  TL   +
Sbjct: 16  EYSLTLSLKSHRSNKLSDRELIQIICKNLFYGKITYLHSDKGPEMSPTMTANENTL--LI 73

Query: 187 RKTMLKNNR 195
           RK  + N R
Sbjct: 74  RKIPIANTR 82


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,635,165
Number of Sequences: 28952
Number of extensions: 324005
Number of successful extensions: 731
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 6
length of query: 324
length of database: 12,070,560
effective HSP length: 81
effective length of query: 243
effective length of database: 9,725,448
effective search space: 2363283864
effective search space used: 2363283864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)