Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000391-TA|BGIBMGA000391-PA|IPR003437|Glycine cleavage
system P-protein
         (975 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   4.4  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    24   5.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 106 PHAIMRNMFENPGWTTQYTPYQPEVAQGR 134
           P+ ++ N + +P  +  Y PY P    GR
Sbjct: 127 PYTVISNGYSSPMSSGSYDPYSPNGKIGR 155


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 158 LLDEGTAAAEALSLCHRHNKRTKFVVSE 185
           +L E   +   ++ C R  KR+KF +SE
Sbjct: 12  VLSESLVSGCLITNCPRGGKRSKFAISE 39


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,554
Number of Sequences: 317
Number of extensions: 9142
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 2
length of query: 975
length of database: 114,650
effective HSP length: 63
effective length of query: 912
effective length of database: 94,679
effective search space: 86347248
effective search space used: 86347248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)