Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000391-TA|BGIBMGA000391-PA|IPR003437|Glycine cleavage
system P-protein
(975 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 983 0.0
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 29 3.1
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 29 4.1
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 29 4.1
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 29 4.1
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar... 27 9.6
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 983 bits (2432), Expect = 0.0
Identities = 490/986 (49%), Positives = 648/986 (65%), Gaps = 43/986 (4%)
Query: 19 FPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQ-------GLMNISE 71
FP F RHIGP D L+ LGYK D D +P ++ G +N +E
Sbjct: 43 FPALDTFEPRHIGPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRTPESQLMAFGSVNPNE 102
Query: 72 ---PI--SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPY 126
P+ SE + +A +N++ +S+IGMGY+N +P AI RN+ ENP W TQYTPY
Sbjct: 103 KNPPVNYSESEFTTLANNVANQNKLIKSFIGMGYYNVKLPAAIQRNVLENPEWYTQYTPY 162
Query: 127 QPEVAQGRLESLLNYQTMVSDMTGLDVANASLLDEGTAAAEALSLCHRHNKRTK--FVVS 184
Q E++QGRLES++NYQTM++D+TGL ++NASLLDEGTAA EA+ + ++K+ + F+V
Sbjct: 163 QAEISQGRLESMMNYQTMIADLTGLSISNASLLDEGTAAGEAMVMLMANDKKKRKTFLVD 222
Query: 185 ERLHPQTLAVVHTRMDALGLDVL---VVPDVRHVDFAQRDISAVLLQCPDTRGLVYDYSG 241
+ ++P TL+V+ TR G+ + + P++ + + + + + +Q P G ++DY
Sbjct: 223 KNIYPNTLSVLRTRASGFGIKIELDNITPEL--ITKSAKHVFGIFVQYPAADGSIFDYGH 280
Query: 242 LAAAAHEHGXXXXXXXXXXXXXXIRPPAECGAALAVGTSQRLGVPMGYGGPHAGFFAAEH 301
LAA A ++ P E GA +AVG++QR G+PMGYGGPHAGFFA
Sbjct: 281 LAATARSFNMHVVAATDLLALTILKSPGEWGADVAVGSTQRFGLPMGYGGPHAGFFACSE 340
Query: 302 QLVRLMPGRMVGVTRDTTGRDAYRLALQTREQHIRRDKATSNICTAQALLANMSAMYAVY 361
+ R +PGR++G+++D AYRLALQTREQHIRR+KATSNICTAQALLANMSA YA+Y
Sbjct: 341 EFKRKIPGRLIGLSKDRLENPAYRLALQTREQHIRREKATSNICTAQALLANMSAFYAIY 400
Query: 362 HGPQGLREIATRVHNATLVLDHGIKMRGHKQSNDV-YFDTLYVVPSPDHDASAIKARAEE 420
HGP GL+EIA R++ +T L ++ G+K N +FDTL + A + A+A +
Sbjct: 401 HGPNGLQEIANRIYASTSFLKSALESSGYKIVNKSHFFDTLTIEVE---SADKVLAKALD 457
Query: 421 KKVNLRYFDEGAVGVALDETTTMKDIEDLLWIFDC-KNVQEV-------------AQTED 466
NLR D+ VG++LDET KDI+ L IF+ K+V + A T D
Sbjct: 458 HGYNLRKVDDSHVGLSLDETVCDKDIQALFSIFNINKSVDQYYMEIATSEPNGNSASTVD 517
Query: 467 ILSKSVLKGPFRRTSPYLTHPVFNMHHSETKLVRYMKRLENKDISLVHSMIPLGSCTMKL 526
LS L FRRT+ YL HPVFN +HSET+L+RY+ L++KD+SL H+M PLGSCTMKL
Sbjct: 518 NLSICSLPENFRRTTLYLQHPVFNRYHSETELMRYIHHLQSKDLSLAHAMTPLGSCTMKL 577
Query: 527 NSTTEMMPCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGE 586
N+ TEMMP + F +IHP+ P EQ +GY + E+L L ITG+D FQPNSGA GE
Sbjct: 578 NAVTEMMPITNPLFANIHPYVPEEQAKGYRHVIEDLQLMLTTITGFDAACFQPNSGAAGE 637
Query: 587 YAGLRTIKRYHEYRGDAGRNICLIPVSAHGTNPASAHMAGMRVCAIRVTPTGDIDMAHLK 646
Y GL I+ Y G RNICLIPVSAHGTNPASA MAG V ++ G +DM LK
Sbjct: 638 YTGLSVIRAYQRSIGQGHRNICLIPVSAHGTNPASAAMAGFTVIPVKCLNNGYLDMQDLK 697
Query: 647 DMVEEHSEKVSCLMLTYPSTFGVFEEKAADICALVHAHGGQVYLDGANMNAQVGLCRPGD 706
+ +H++K++ M+TYPSTFG+FE + ++H HGGQVY DGANMNA VGLC+ GD
Sbjct: 698 EKASKHADKLAAFMVTYPSTFGIFEPDVKEALEVIHEHGGQVYFDGANMNAMVGLCKAGD 757
Query: 707 YGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVVDPLADLGDAAHSFGSV 766
G+DV HLNLHKTFCI VK HLA FLPSHPVV + SV
Sbjct: 758 IGADVCHLNLHKTFCIPHGGGGPGVGPICVKKHLADFLPSHPVVS-----CGGKNGITSV 812
Query: 767 SAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVA 826
S++PFGS+ ILPISWAY++MMG GLR A++ A+LNANYM++RL HYK +Y + L A
Sbjct: 813 SSSPFGSAGILPISWAYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNLCA 872
Query: 827 HEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVAGTLMIEPTESEDLQELDRFC 886
HEFI+D R+ K TA ++ DIAKRL D+ FHAPT+SWP+A TLMIEPTESE + E+DRFC
Sbjct: 873 HEFILDAREFKATAGVDATDIAKRLQDYSFHAPTLSWPIANTLMIEPTESESMYEMDRFC 932
Query: 887 DALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTREQAAFPAPFVKGET 946
DALI+IR+EI++IE+GL K N L APH Q+++ SE+W+RPYTRE+A +P P +K E
Sbjct: 933 DALISIRQEIREIEEGLQPKDNNLLVNAPHPQKDIASEKWDRPYTRERAVYPVPLLK-ER 991
Query: 947 KIWPTVGRIDDMYGDKHLVCTCPPVI 972
K WP+V R+DD YGDK+L CTC PV+
Sbjct: 992 KFWPSVARLDDAYGDKNLFCTCSPVV 1017
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 435 VALDETTTMKDIEDLLWIF-DCKNVQEVAQTEDILSKSV-LKGPFRRTSPYLTHPVFNMH 492
V + + +EDL ++ D K + + + L K V L FR+ L H F +
Sbjct: 1146 VEIPRLSNRPKLEDLQSLYKDVKLLPFQPKETETLRKVVDLASKFRQEMQALAHNPFGLT 1205
Query: 493 HSETKLVR-YMKRLENKDISLV 513
+E L R Y++++E +I LV
Sbjct: 1206 MAEVPLARFYLRKMEGAEILLV 1227
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 926 WNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYGDKHLVCTCPPVI 972
W PY QA+FPAP V G + + L+ C P+I
Sbjct: 347 WYSPYLCYQASFPAPIVIGLWMLQEYAWNVFPSTKLSSLIAVCVPLI 393
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 376 NATLVLDHGIKMRGHKQSNDVYFDTLYVVPSPDHDA--SAIKARAEEKKVNLRYFDEGAV 433
NA +++ H KM + + FD + V P P H A S+I R + + + G
Sbjct: 33 NACVIVVHWDKMSPDLWEDILQFDAIVVGPGPGHPAEYSSILNRIWQLNIPVMGICLGFQ 92
Query: 434 GVALDETTTMKDIEDLLW 451
+AL T++ + +L W
Sbjct: 93 SLALYHGATIERMPNLPW 110
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 400 TLYVVPSPDHDASAIKARAEEKKVNLRYFDEGAVGVALDETT 441
TLYVVPS D +S A+ ++ + FD A + ET+
Sbjct: 22 TLYVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETS 63
>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 900 EDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTR---EQAAFPAPFVKGETKIWPTVGRID 956
E G ++ + L L ++EE S W + E+A P F +G+T I P+ D
Sbjct: 95 ELGAVESSTSSLSLL-QSKEEDDSSNWETEDSESAVEEAELPTIF-EGKTVISPSSSGTD 152
Query: 957 DMYGDKHLVCTCPPVID 973
++ V T PP+ D
Sbjct: 153 HSEAVEYTVPTAPPIPD 169
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,368,098
Number of Sequences: 5004
Number of extensions: 181476
Number of successful extensions: 379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 6
length of query: 975
length of database: 2,362,478
effective HSP length: 80
effective length of query: 895
effective length of database: 1,962,158
effective search space: 1756131410
effective search space used: 1756131410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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