Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000391-TA|BGIBMGA000391-PA|IPR003437|Glycine cleavage
system P-protein
(975 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 1058 0.0
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]... 1036 0.0
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 35 0.30
At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative / 4-c... 32 1.6
At4g12440.2 68417.m01969 adenine phosphoribosyltransferase, puta... 31 3.7
At4g12440.1 68417.m01968 adenine phosphoribosyltransferase, puta... 31 3.7
At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C... 31 4.9
At4g28510.1 68417.m04078 prohibitin, putative similar to SP|P241... 30 6.5
At1g67650.1 68414.m07720 expressed protein 30 6.5
At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat... 30 8.6
At3g43940.1 68416.m04703 hypothetical protein 30 8.6
At1g67680.1 68414.m07723 expressed protein 30 8.6
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 1058 bits (2619), Expect = 0.0
Identities = 512/974 (52%), Positives = 671/974 (68%), Gaps = 16/974 (1%)
Query: 10 TQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQGLMN- 68
T+S D L P FP RH + M + G+ +L+ L + VPK I+ +
Sbjct: 70 TRSISVDALKPSDT-FPRRHNSATPDEQAQMANYCGFDNLNTLIDSTVPKSIRLDSMKFS 128
Query: 69 --ISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPY 126
E ++E +IE + +A KN++++S+IGMGY+N VP I+RN+ ENP W TQYTPY
Sbjct: 129 GIFDEGLTESQMIEHMSDLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPY 188
Query: 127 QPEVAQGRLESLLNYQTMVSDMTGLDVANASLLDEGTAAAEALSLCHR--HNKRTKFVVS 184
Q E++QGRLESLLNYQT+++D+TGL ++NASLLDEGTAAAEA+++C+ K+ FV++
Sbjct: 189 QAEISQGRLESLLNYQTVITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFVIA 248
Query: 185 ERLHPQTLAVVHTRMDALGLDVLVVPDVRHVDFAQRDISAVLLQCPDTRGLVYDYSGLAA 244
HPQT+ V TR D L V+ V D++ VD++ D+ VL+Q P T G V DY
Sbjct: 249 SNCHPQTIDVCKTRADGFDLKVVTV-DIKDVDYSSGDVCGVLVQYPGTEGEVLDYGEFVK 307
Query: 245 AAHEHGXXXXXXXXXXXXXXIRPPAECGAALAVGTSQRLGVPMGYGGPHAGFFAAEHQLV 304
AH +G ++PP E GA + VG+ QR GVPMGYGGPHA F A +
Sbjct: 308 NAHANGVKVVMATDLLALTMLKPPGEFGADIVVGSGQRFGVPMGYGGPHAAFLATSQEYK 367
Query: 305 RLMPGRMVGVTRDTTGRDAYRLALQTREQHIRRDKATSNICTAQALLANMSAMYAVYHGP 364
R+MPGR++GV+ D++G+ A R+A+QTREQHIRRDKATSNICTAQALLANM+AMYAVYHGP
Sbjct: 368 RMMPGRIIGVSVDSSGKQALRMAMQTREQHIRRDKATSNICTAQALLANMTAMYAVYHGP 427
Query: 365 QGLREIATRVHNATLVLDHGIKMRGHKQSNDV-YFDTLYVVPSPDHDASAIKARAEEKKV 423
+GL+ IA RVH V G+K G Q D+ +FDT+ V S DA+AI A +K++
Sbjct: 428 EGLKSIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTVKVTCS---DATAIFDVAAKKEI 484
Query: 424 NLRYFDEGAVGVALDETTTMKDIEDLLWIFDC-KNVQEVAQTEDILSKSVLKGPFRRTSP 482
NLR D + VA DETTT+ D++ L +F K VQ A++ + + R SP
Sbjct: 485 NLRLVDSNTITVAFDETTTLDDVDKLFEVFASGKPVQFTAESLAPEFNNAIPSSLTRESP 544
Query: 483 YLTHPVFNMHHSETKLVRYMKRLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSYKHFTD 542
YLTHP+FNM+H+E +L+RY+ +L+NKD+SL HSMIPLGSCTMKLN+TTEMMP ++ FT+
Sbjct: 545 YLTHPIFNMYHTEHELLRYIHKLQNKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTN 604
Query: 543 IHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTIKRYHEYRGD 602
+HPFAP+EQ QGY +F L LC ITG+D S QPN+GA GEYAGL I+ YH RGD
Sbjct: 605 MHPFAPVEQAQGYQEMFTNLGELLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGD 664
Query: 603 AGRNICLIPVSAHGTNPASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLT 662
RN+C+IPVSAHGTNPASA M GM++ A+ G+I++ L++ E + + ++ LM+T
Sbjct: 665 HHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEELRNAAEANKDNLAALMVT 724
Query: 663 YPSTFGVFEEKAADICALVHAHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCI 722
YPST GV+EE +IC ++H +GGQVY+DGANMNAQVGL PG G+DV HLNLHKTFCI
Sbjct: 725 YPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCI 784
Query: 723 XXXXXXXXXXXXXVKAHLAPFLPSHPVVDPLADLGDAAHS--FGSVSAAPFGSSAILPIS 780
VK HLAPFLPSHPV+ P + + + G++SAAP+GS+ ILPIS
Sbjct: 785 PHGGGGPGMGPIGVKQHLAPFLPSHPVI-PTGGIPEPEQTSPLGTISAAPWGSALILPIS 843
Query: 781 WAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFIIDVRDLKKTA 840
+ YI MMG GL A+++AILNANYM++RLE HY L++G G VAHEFIID+R K TA
Sbjct: 844 YTYIAMMGSGGLTDASKIAILNANYMAKRLESHYPVLFRGVNGTVAHEFIIDLRGFKNTA 903
Query: 841 NIEPGDIAKRLMDFGFHAPTMSWPVAGTLMIEPTESEDLQELDRFCDALITIRKEIKDIE 900
IEP D+AKRLMD+GFH PTMSWPV GTLMIEPTESE ELDRFCDALI+IR+EI IE
Sbjct: 904 GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEISQIE 963
Query: 901 DGLIDKRLNPLKLAPHTQEEVISEEWNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYG 960
G D N LK APH ++++ W +PY+RE AAFPAP+++ +K WPT GR+D++YG
Sbjct: 964 KGNADPNNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLR-SSKFWPTTGRVDNVYG 1022
Query: 961 DKHLVCTCPPVIDD 974
D++LVCT P ++
Sbjct: 1023 DRNLVCTLQPANEE 1036
>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P49361 Glycine dehydrogenase [decarboxylating] A,
mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1037
Score = 1036 bits (2564), Expect = 0.0
Identities = 499/973 (51%), Positives = 663/973 (68%), Gaps = 15/973 (1%)
Query: 6 RHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQG 65
RH T+S D + P FP RH + M G+ +D L + VPK I+
Sbjct: 61 RHQQTRSISVDAVKPSDT-FPRRHNSATPDEQTHMAKFCGFDHIDSLIDATVPKSIRLDS 119
Query: 66 LM--NISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQY 123
+ ++E +I+ + +A KN++++S+IGMGY+N VP I+RN+ ENP W TQY
Sbjct: 120 MKFSKFDAGLTESQMIQHMVDLASKNKVFKSFIGMGYYNTHVPTVILRNIMENPAWYTQY 179
Query: 124 TPYQPEVAQGRLESLLNYQTMVSDMTGLDVANASLLDEGTAAAEALSLCHR--HNKRTKF 181
TPYQ E++QGRLESLLN+QT+++D+TGL ++NASLLDEGTAAAEA+++C+ K+ F
Sbjct: 180 TPYQAEISQGRLESLLNFQTVITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTF 239
Query: 182 VVSERLHPQTLAVVHTRMDALGLDVLVVPDVRHVDFAQRDISAVLLQCPDTRGLVYDYSG 241
V++ HPQT+ V TR D L V V D++ +D++ D+ VL+Q P T G V DY+
Sbjct: 240 VIASNCHPQTIDVCKTRADGFDLKV-VTSDLKDIDYSSGDVCGVLVQYPGTEGEVLDYAE 298
Query: 242 LAAAAHEHGXXXXXXXXXXXXXXIRPPAECGAALAVGTSQRLGVPMGYGGPHAGFFAAEH 301
AH +G ++PP E GA + VG++QR GVPMGYGGPHA F A
Sbjct: 299 FVKNAHANGVKVVMATDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQ 358
Query: 302 QLVRLMPGRMVGVTRDTTGRDAYRLALQTREQHIRRDKATSNICTAQALLANMSAMYAVY 361
+ R+MPGR++G++ D++G+ A R+A+QTREQHIRRDKATSNICTAQALLANM+AMYAVY
Sbjct: 359 EYKRMMPGRIIGISVDSSGKQALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 418
Query: 362 HGPQGLREIATRVHNATLVLDHGIKMRGHKQSNDV-YFDTLYVVPSPDHDASAIKARAEE 420
HGP GL+ IA RVH + G+ G + ++ +FDT+ + S DA AI A +
Sbjct: 419 HGPAGLKSIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCS---DAHAIADAASK 475
Query: 421 KKVNLRYFDEGAVGVALDETTTMKDIEDLLWIFDC-KNVQEVAQTEDILSKSVLKGPFRR 479
++NLR D + + DETTT+ D++ L +F K V A++ ++ + R
Sbjct: 476 SEINLRVVDSTTITASFDETTTLDDVDKLFKVFASGKPVPFTAESLAPEVQNSIPSSLTR 535
Query: 480 TSPYLTHPVFNMHHSETKLVRYMKRLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSYKH 539
SPYLTHP+FNM+H+E +L+RY+ +L++KD+SL HSMIPLGSCTMKLN+TTEMMP ++
Sbjct: 536 ESPYLTHPIFNMYHTEHELLRYIHKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPS 595
Query: 540 FTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTIKRYHEY 599
FTDIHPFAP+EQ QGY +FE L + LC ITG+D S QPN+GA GEYAGL I+ YH
Sbjct: 596 FTDIHPFAPVEQAQGYQEMFENLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMS 655
Query: 600 RGDAGRNICLIPVSAHGTNPASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCL 659
RGD RN+C+IPVSAHGTNPASA M GM++ + G+I++ ++ E + + ++ L
Sbjct: 656 RGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDAKGNINIEEVRKAAEANKDNLAAL 715
Query: 660 MLTYPSTFGVFEEKAADICALVHAHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKT 719
M+TYPST GV+EE +IC ++H +GGQVY+DGANMNAQVGL PG G+DV HLNLHKT
Sbjct: 716 MVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKT 775
Query: 720 FCIXXXXXXXXXXXXXVKAHLAPFLPSHPVVDPLADL--GDAAHSFGSVSAAPFGSSAIL 777
FCI VK HLAPFLPSHPV+ P + + G++SAAP+GS+ IL
Sbjct: 776 FCIPHGGGGPGMGPIGVKNHLAPFLPSHPVI-PTGGIPQPEKTAPLGAISAAPWGSALIL 834
Query: 778 PISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFIIDVRDLK 837
PIS+ YI MMG GL A+++AILNANYM++RLE HY L++G G VAHEFIID+R K
Sbjct: 835 PISYTYIAMMGSGGLTDASKIAILNANYMAKRLEKHYPVLFRGVNGTVAHEFIIDLRGFK 894
Query: 838 KTANIEPGDIAKRLMDFGFHAPTMSWPVAGTLMIEPTESEDLQELDRFCDALITIRKEIK 897
TA IEP D+AKRLMD+GFH PTMSWPV GTLMIEPTESE ELDRFCDALI+IR+EI
Sbjct: 895 NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIA 954
Query: 898 DIEDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTREQAAFPAPFVKGETKIWPTVGRIDD 957
IE G D + N LK APH ++++ W +PY+RE AAFPAP+++ +K WPT GR+D+
Sbjct: 955 QIEKGNADVQNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLR-SSKFWPTTGRVDN 1013
Query: 958 MYGDKHLVCTCPP 970
+YGD+ LVCT P
Sbjct: 1014 VYGDRKLVCTLLP 1026
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 34.7 bits (76), Expect = 0.30
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 772 GSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFII 831
G I+ + ++ + P +RR + +Y + + +KTL K L +H
Sbjct: 348 GQERIIVFTTNHLAKLDPALIRRGRMDMHIELSYCTF---EAFKTLAKNYLDLDSHPLFS 404
Query: 832 DVRDLKKTANIEPGDIAKRLM 852
+ L K NI P D+A+ LM
Sbjct: 405 KIESLMKETNIAPADVAENLM 425
>At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative /
4-coumaroyl-CoA synthase, putative similar to 4CL2
[gi:12229665] from Arabidopsis thaliana, 4CL1
[gi:12229631] from Nicotiana tabacum; contains Pfam
AMP-binding enzyme domain PF00501; acyl-activating
enzyme superfamily; identical to cDNA 4-coumarate-CoA
ligase-like protein (At4g05160) GI:29893226
Length = 544
Score = 32.3 bits (70), Expect = 1.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 43 LLGYKSLDQLTNDAVPKKIQFQGLMNISEPISEYDLIE 80
LLG K ++ + K + F +M +SEP+SEY +E
Sbjct: 149 LLGSKDTVEIPPGSNSKILSFDNVMELSEPVSEYPFVE 186
>At4g12440.2 68417.m01969 adenine phosphoribosyltransferase,
putative strong similarity to SP|P31166 Adenine
phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
{Arabidopsis thaliana}; contains Pfam profile PF00156:
Phosphoribosyl transferase domain
Length = 182
Score = 31.1 bits (67), Expect = 3.7
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 771 FGSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFI 830
FGS L I ++ + PK L Y S RLE H + + G+R LV + I
Sbjct: 73 FGSPIALAIGAKFVPLRKPKKLPGQIIFEEYELEYGSDRLEMHVEAVDSGDRALVVDDLI 132
>At4g12440.1 68417.m01968 adenine phosphoribosyltransferase,
putative strong similarity to SP|P31166 Adenine
phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
{Arabidopsis thaliana}; contains Pfam profile PF00156:
Phosphoribosyl transferase domain
Length = 178
Score = 31.1 bits (67), Expect = 3.7
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 771 FGSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFI 830
FGS L I ++ + PK L Y S RLE H + + G+R LV + I
Sbjct: 73 FGSPIALAIGAKFVPLRKPKKLPGQIIFEEYELEYGSDRLEMHVEAVDSGDRALVVDDLI 132
>At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase 2C GI:2582800
from [Medicago sativa]
Length = 380
Score = 30.7 bits (66), Expect = 4.9
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 284 GVPMGYGGPHAGFFAAEHQLVRLMPGRMVGVTRDTTGRDAYRLA-LQTREQHIRRDKATS 342
GV G+GGP A FAA++ ++ G +VG ++ +A + L T + ++
Sbjct: 155 GVYDGHGGPTAAEFAAKNLCSNIL-GEIVGGRNESKIEEAVKRGYLATDSEFLKEKNVKG 213
Query: 343 NICTAQALLANMSAMYA 359
C AL+++ + + A
Sbjct: 214 GSCCVTALISDGNLVVA 230
>At4g28510.1 68417.m04078 prohibitin, putative similar to SP|P24142
Prohibitin (B-cell receptor associated protein 32) (BAP
32) {Rattus norvegicus}; contains Pfam profile PF01145:
SPFH domain / Band 7 family
Length = 288
Score = 30.3 bits (65), Expect = 6.5
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 90 EIWRSYIGMGYHNCCVPHAIMRNM------FENPGWTTQYTPYQPEVAQGRLESLLNYQT 143
EI+RS +G Y +P I + + TQ E+ + E N+
Sbjct: 114 EIYRS-LGENYSERVLPSIINETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNV 172
Query: 144 MVSDMTGLDVANASLLDEGTAAAEALSLCHRHNKRTKFVVSERLHPQTLAVVHTRMDA 201
+ D++ + N + E TAA EA + + +R KF+V + + AV+ + +A
Sbjct: 173 ALDDVS---ITNLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKRSAVIRAQGEA 227
>At1g67650.1 68414.m07720 expressed protein
Length = 651
Score = 30.3 bits (65), Expect = 6.5
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 164 AAAEALSLCHRHNKRTKFVVSERLHPQTLAVVHTRMDALGLDVL-VVPDVRHVDFAQRDI 222
A + + H+H K TK+ + ++ Q L++V T DA+ V+ ++ D + D+ +D+
Sbjct: 15 AIEDLFTSLHKHIKDTKYEEAVKVADQVLSIVPTDEDAIRCKVVALIKDDKFDDYLIKDV 74
>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
similar to mitogen-activated protein kinase [Arabidopsis
thaliana] gi|1255448|dbj|BAA09057; contains Pfam
PF00069: Protein kinase domain
Length = 773
Score = 29.9 bits (64), Expect = 8.6
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 810 LEDHYKTLYKGERGLVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVAGTL 869
L D T+ + GL + D++ K+T ++ R + G+ +P W + T+
Sbjct: 631 LVDANGTVKLADFGLAKVSKLNDIKSRKETLFWMAPEVINRKDNDGYRSPADIWSLGCTV 690
Query: 870 MIEPTESEDLQELDRFCDALITIRK-EIKDIEDGL-IDKR---LNPLKLAPHTQEEVISE 924
+ T +L+ +AL IR+ + ++ D L +D R L LKL P + +E
Sbjct: 691 LEMCTGQIPYSDLEP-VEALFRIRRGTLPEVPDTLSLDARHFILKCLKLNPE-ERPTATE 748
Query: 925 EWNRPYTR 932
N P+ R
Sbjct: 749 LLNHPFVR 756
>At3g43940.1 68416.m04703 hypothetical protein
Length = 202
Score = 29.9 bits (64), Expect = 8.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 270 ECGAALAVGTSQRLGVPMGYGGPHAGFFAAEHQLVRLMPGRMVGVTRDTTGR 321
E G + +GT LGV + +GG AG AEH+ + GR +G G+
Sbjct: 118 EVGVSWKLGTGHCLGV-IRWGGIMAGRVHAEHRYMLNSDGRTMGALSQEIGK 168
>At1g67680.1 68414.m07723 expressed protein
Length = 664
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 164 AAAEALSLCHRHNKRTKFVVSERLHPQTLAVVHTRMDALGLDVL-VVPDVRHVDFAQRDI 222
A + + H+H K TK+ + ++ Q L++V T DA+ V+ ++ D + D+ +D+
Sbjct: 19 AIEDLFTSLHQHIKDTKYEEAVKVADQVLSIVPTDEDAIRCKVVALIKDDKFDDYLIKDV 78
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,680,695
Number of Sequences: 28952
Number of extensions: 951705
Number of successful extensions: 1995
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1970
Number of HSP's gapped (non-prelim): 15
length of query: 975
length of database: 12,070,560
effective HSP length: 88
effective length of query: 887
effective length of database: 9,522,784
effective search space: 8446709408
effective search space used: 8446709408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)
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