GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000391-TA|BGIBMGA000391-PA|IPR003437|Glycine cleavage
system P-protein
         (975 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...   983   0.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    29   3.1  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    29   4.1  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    29   4.1  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    29   4.1  
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    27   9.6  

>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score =  983 bits (2432), Expect = 0.0
 Identities = 490/986 (49%), Positives = 648/986 (65%), Gaps = 43/986 (4%)

Query: 19   FPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQ-------GLMNISE 71
            FP    F  RHIGP   D    L+ LGYK  D    D +P  ++         G +N +E
Sbjct: 43   FPALDTFEPRHIGPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRTPESQLMAFGSVNPNE 102

Query: 72   ---PI--SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPY 126
               P+  SE +       +A +N++ +S+IGMGY+N  +P AI RN+ ENP W TQYTPY
Sbjct: 103  KNPPVNYSESEFTTLANNVANQNKLIKSFIGMGYYNVKLPAAIQRNVLENPEWYTQYTPY 162

Query: 127  QPEVAQGRLESLLNYQTMVSDMTGLDVANASLLDEGTAAAEALSLCHRHNKRTK--FVVS 184
            Q E++QGRLES++NYQTM++D+TGL ++NASLLDEGTAA EA+ +   ++K+ +  F+V 
Sbjct: 163  QAEISQGRLESMMNYQTMIADLTGLSISNASLLDEGTAAGEAMVMLMANDKKKRKTFLVD 222

Query: 185  ERLHPQTLAVVHTRMDALGLDVL---VVPDVRHVDFAQRDISAVLLQCPDTRGLVYDYSG 241
            + ++P TL+V+ TR    G+ +    + P++  +  + + +  + +Q P   G ++DY  
Sbjct: 223  KNIYPNTLSVLRTRASGFGIKIELDNITPEL--ITKSAKHVFGIFVQYPAADGSIFDYGH 280

Query: 242  LAAAAHEHGXXXXXXXXXXXXXXIRPPAECGAALAVGTSQRLGVPMGYGGPHAGFFAAEH 301
            LAA A                  ++ P E GA +AVG++QR G+PMGYGGPHAGFFA   
Sbjct: 281  LAATARSFNMHVVAATDLLALTILKSPGEWGADVAVGSTQRFGLPMGYGGPHAGFFACSE 340

Query: 302  QLVRLMPGRMVGVTRDTTGRDAYRLALQTREQHIRRDKATSNICTAQALLANMSAMYAVY 361
            +  R +PGR++G+++D     AYRLALQTREQHIRR+KATSNICTAQALLANMSA YA+Y
Sbjct: 341  EFKRKIPGRLIGLSKDRLENPAYRLALQTREQHIRREKATSNICTAQALLANMSAFYAIY 400

Query: 362  HGPQGLREIATRVHNATLVLDHGIKMRGHKQSNDV-YFDTLYVVPSPDHDASAIKARAEE 420
            HGP GL+EIA R++ +T  L   ++  G+K  N   +FDTL +       A  + A+A +
Sbjct: 401  HGPNGLQEIANRIYASTSFLKSALESSGYKIVNKSHFFDTLTIEVE---SADKVLAKALD 457

Query: 421  KKVNLRYFDEGAVGVALDETTTMKDIEDLLWIFDC-KNVQEV-------------AQTED 466
               NLR  D+  VG++LDET   KDI+ L  IF+  K+V +              A T D
Sbjct: 458  HGYNLRKVDDSHVGLSLDETVCDKDIQALFSIFNINKSVDQYYMEIATSEPNGNSASTVD 517

Query: 467  ILSKSVLKGPFRRTSPYLTHPVFNMHHSETKLVRYMKRLENKDISLVHSMIPLGSCTMKL 526
             LS   L   FRRT+ YL HPVFN +HSET+L+RY+  L++KD+SL H+M PLGSCTMKL
Sbjct: 518  NLSICSLPENFRRTTLYLQHPVFNRYHSETELMRYIHHLQSKDLSLAHAMTPLGSCTMKL 577

Query: 527  NSTTEMMPCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGE 586
            N+ TEMMP +   F +IHP+ P EQ +GY  + E+L   L  ITG+D   FQPNSGA GE
Sbjct: 578  NAVTEMMPITNPLFANIHPYVPEEQAKGYRHVIEDLQLMLTTITGFDAACFQPNSGAAGE 637

Query: 587  YAGLRTIKRYHEYRGDAGRNICLIPVSAHGTNPASAHMAGMRVCAIRVTPTGDIDMAHLK 646
            Y GL  I+ Y    G   RNICLIPVSAHGTNPASA MAG  V  ++    G +DM  LK
Sbjct: 638  YTGLSVIRAYQRSIGQGHRNICLIPVSAHGTNPASAAMAGFTVIPVKCLNNGYLDMQDLK 697

Query: 647  DMVEEHSEKVSCLMLTYPSTFGVFEEKAADICALVHAHGGQVYLDGANMNAQVGLCRPGD 706
            +   +H++K++  M+TYPSTFG+FE    +   ++H HGGQVY DGANMNA VGLC+ GD
Sbjct: 698  EKASKHADKLAAFMVTYPSTFGIFEPDVKEALEVIHEHGGQVYFDGANMNAMVGLCKAGD 757

Query: 707  YGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVVDPLADLGDAAHSFGSV 766
             G+DV HLNLHKTFCI             VK HLA FLPSHPVV          +   SV
Sbjct: 758  IGADVCHLNLHKTFCIPHGGGGPGVGPICVKKHLADFLPSHPVVS-----CGGKNGITSV 812

Query: 767  SAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVA 826
            S++PFGS+ ILPISWAY++MMG  GLR A++ A+LNANYM++RL  HYK +Y  +  L A
Sbjct: 813  SSSPFGSAGILPISWAYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNLCA 872

Query: 827  HEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVAGTLMIEPTESEDLQELDRFC 886
            HEFI+D R+ K TA ++  DIAKRL D+ FHAPT+SWP+A TLMIEPTESE + E+DRFC
Sbjct: 873  HEFILDAREFKATAGVDATDIAKRLQDYSFHAPTLSWPIANTLMIEPTESESMYEMDRFC 932

Query: 887  DALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTREQAAFPAPFVKGET 946
            DALI+IR+EI++IE+GL  K  N L  APH Q+++ SE+W+RPYTRE+A +P P +K E 
Sbjct: 933  DALISIRQEIREIEEGLQPKDNNLLVNAPHPQKDIASEKWDRPYTRERAVYPVPLLK-ER 991

Query: 947  KIWPTVGRIDDMYGDKHLVCTCPPVI 972
            K WP+V R+DD YGDK+L CTC PV+
Sbjct: 992  KFWPSVARLDDAYGDKNLFCTCSPVV 1017


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 435  VALDETTTMKDIEDLLWIF-DCKNVQEVAQTEDILSKSV-LKGPFRRTSPYLTHPVFNMH 492
            V +   +    +EDL  ++ D K +    +  + L K V L   FR+    L H  F + 
Sbjct: 1146 VEIPRLSNRPKLEDLQSLYKDVKLLPFQPKETETLRKVVDLASKFRQEMQALAHNPFGLT 1205

Query: 493  HSETKLVR-YMKRLENKDISLV 513
             +E  L R Y++++E  +I LV
Sbjct: 1206 MAEVPLARFYLRKMEGAEILLV 1227


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 926 WNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYGDKHLVCTCPPVI 972
           W  PY   QA+FPAP V G   +      +        L+  C P+I
Sbjct: 347 WYSPYLCYQASFPAPIVIGLWMLQEYAWNVFPSTKLSSLIAVCVPLI 393


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 376 NATLVLDHGIKMRGHKQSNDVYFDTLYVVPSPDHDA--SAIKARAEEKKVNLRYFDEGAV 433
           NA +++ H  KM      + + FD + V P P H A  S+I  R  +  + +     G  
Sbjct: 33  NACVIVVHWDKMSPDLWEDILQFDAIVVGPGPGHPAEYSSILNRIWQLNIPVMGICLGFQ 92

Query: 434 GVALDETTTMKDIEDLLW 451
            +AL    T++ + +L W
Sbjct: 93  SLALYHGATIERMPNLPW 110


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 400 TLYVVPSPDHDASAIKARAEEKKVNLRYFDEGAVGVALDETT 441
           TLYVVPS D  +S     A+ ++  +  FD  A    + ET+
Sbjct: 22  TLYVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETS 63


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 900 EDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTR---EQAAFPAPFVKGETKIWPTVGRID 956
           E G ++   + L L   ++EE  S  W    +    E+A  P  F +G+T I P+    D
Sbjct: 95  ELGAVESSTSSLSLL-QSKEEDDSSNWETEDSESAVEEAELPTIF-EGKTVISPSSSGTD 152

Query: 957 DMYGDKHLVCTCPPVID 973
                ++ V T PP+ D
Sbjct: 153 HSEAVEYTVPTAPPIPD 169


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,368,098
Number of Sequences: 5004
Number of extensions: 181476
Number of successful extensions: 379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 6
length of query: 975
length of database: 2,362,478
effective HSP length: 80
effective length of query: 895
effective length of database: 1,962,158
effective search space: 1756131410
effective search space used: 1756131410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)