Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000391-TA|BGIBMGA000391-PA|IPR003437|Glycine cleavage
system P-protein
(975 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27105| Best HMM Match : GDC-P (HMM E-Value=0) 374 e-103
SB_313| Best HMM Match : Beta_elim_lyase (HMM E-Value=2.7) 283 6e-76
SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.007
SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.16
SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.37
SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062) 34 0.64
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 5.9
SB_54534| Best HMM Match : IRF (HMM E-Value=0.0051) 30 7.9
SB_49832| Best HMM Match : CXCXC (HMM E-Value=0.00036) 30 7.9
SB_18942| Best HMM Match : efhand (HMM E-Value=1.7e-30) 30 7.9
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015) 30 7.9
>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
Length = 767
Score = 374 bits (921), Expect = e-103
Identities = 201/398 (50%), Positives = 250/398 (62%), Gaps = 45/398 (11%)
Query: 587 YAGLRTIKRYHEYRGDAGRNICLIP----VSAHGTNPASAHMAGMRVCAIRVTPTGDIDM 642
YA ++ K Y + + ++ C I V + A G+RV + G
Sbjct: 394 YAPIQQAKGYLQLYDEFEKDFCEITGFDAVCFQPNSGAQGEYTGLRVIKAYLENNGQ--- 450
Query: 643 AHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADICALVHAHGGQVYLDGANMNAQVGLC 702
H K VE+ S++++C+M+TYPST G+FE DIC +VH HGGQVYLDGAN+NAQVGLC
Sbjct: 451 GHRK--VEKFSDELACIMVTYPSTNGIFEAGIRDICDIVHYHGGQVYLDGANLNAQVGLC 508
Query: 703 RPGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVVDPLADLGDAAHS 762
RP DYG+DV H NLHKTFCI VK HL P+LPSHPVV P + + A
Sbjct: 509 RPADYGADVMHSNLHKTFCIPHGGGGPGMGPIGVKKHLIPYLPSHPVVPPQSTIAAGAKP 568
Query: 763 FGSVSAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGER 822
FG +S AP+GSSAILPISWAYIK+MG KGLR+AT+VAILNANYM+ RL+D+Y L+ G+
Sbjct: 569 FGVISGAPYGSSAILPISWAYIKLMGGKGLRKATEVAILNANYMAARLKDYYAVLFVGD- 627
Query: 823 GLVAHEFIIDVRDLKKTANIEPGDIAKRLMDF-------GFHAPTMSWPVAGTLMIEPTE 875
G AHEFI+D +D KKT +E DIAKRL D+ GFHAPT+SWPV+ LMIEPTE
Sbjct: 628 GYCAHEFILDAKDYKKT-GVEAMDIAKRLQDYEKIIDYLGFHAPTVSWPVSTALMIEPTE 686
Query: 876 SEDLQELDRFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTREQA 935
SE ELDR CDALI IR+EI++IEDG+ D + NPLK W
Sbjct: 687 SESKAELDRLCDALICIREEIRNIEDGVWDPKNNPLK------------PW--------- 725
Query: 936 AFPAPFVKGETKIWPTVGRIDDMYGDKHLVCTCPPVID 973
+ G K WP R+DD +GD+HLVCTCPP+ D
Sbjct: 726 ------LNGTNKFWPGCSRVDDKHGDQHLVCTCPPLED 757
Score = 339 bits (833), Expect = 7e-93
Identities = 168/282 (59%), Positives = 202/282 (71%), Gaps = 10/282 (3%)
Query: 329 QTREQHIRRDKATSNICTAQALLANMSAMYAVYHGPQGLREIATRVHNATLVLDHGIKMR 388
+TREQHI+RDKATSNICTAQALLANMSAMYAVYHGP+GLR IA RVHNATL+L GIK
Sbjct: 181 KTREQHIKRDKATSNICTAQALLANMSAMYAVYHGPKGLRNIALRVHNATLLLAEGIKQA 240
Query: 389 GHK-QSNDVYFDTLYVVPSPDHDASAIKARAEEKKVNLRYFDEGAVGVALDETTTMKDIE 447
GH +FDTL V S + S + ARA E+K+NLR + + VGV+LDET +D++
Sbjct: 241 GHTVDEAHPFFDTLKVT-SKTGNVSDMIARAAERKINLRKYSDDKVGVSLDETVKEQDLD 299
Query: 448 DLLWIFDC--KNVQEVAQTEDILSKSVLKGPFRRTSPYLTHPVFNMHHSETKLVRYMKRL 505
DLLW+F C K + ++ KS+L PF+R S +LTHPVFN HH+ET +VRYMK L
Sbjct: 300 DLLWVFGCDSKAAEVGTHLAEVPHKSLLNSPFKRLSSFLTHPVFNTHHAETNVVRYMKLL 359
Query: 506 ENKDISLVHSMIPLGSCTMKLNSTTEMMPCSYKHFTDIHPFAPLEQCQGYHTLFEELAND 565
ENKDISLVHSMIPL LNSTTEMMP ++ F DIHP+AP++Q +GY L++E D
Sbjct: 360 ENKDISLVHSMIPL------LNSTTEMMPITWPRFADIHPYAPIQQAKGYLQLYDEFEKD 413
Query: 566 LCAITGYDRVSFQPNSGAQGEYAGLRTIKRYHEYRGDAGRNI 607
C ITG+D V FQPNSGAQGEY GLR IK Y E G R +
Sbjct: 414 FCEITGFDAVCFQPNSGAQGEYTGLRVIKAYLENNGQGHRKV 455
Score = 206 bits (502), Expect = 9e-53
Identities = 104/201 (51%), Positives = 139/201 (69%), Gaps = 22/201 (10%)
Query: 48 SLDQLTNDAVPKKIQFQGLMNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPH 107
++++L VP I+++ + +SE ISE DL+ R+R I++ N+IWRSYIGMGY++C VP
Sbjct: 1 NMEELIEKTVPSSIRYREDLQLSEAISEPDLLSRLRQISKGNQIWRSYIGMGYYSCHVPT 60
Query: 108 AIMRNMFENPGWTTQYTPYQPEVAQGRLESLLNYQTMVSDMTGLDVANASLLDEGTAAAE 167
I+RN+ ENPGWTT YTPYQPE+AQGRLESLLN+QTMVSD+TGLD+ANASLLDE TAAAE
Sbjct: 61 TILRNILENPGWTTPYTPYQPELAQGRLESLLNFQTMVSDLTGLDIANASLLDEATAAAE 120
Query: 168 ALSLCHRHNKRTKFVVSERLHPQTLAVVHTRMDALGLDVLVVPDVRHVDFAQRDISAVLL 227
A++LC+ L P + G+++ ++ D DF+ +DIS VL
Sbjct: 121 AMALCY-----------STLGP----------EGNGIEI-IIGDKNSFDFSNKDISGVLF 158
Query: 228 QCPDTRGLVYDYSGLAAAAHE 248
Q PDT G + D+SGL AHE
Sbjct: 159 QYPDTNGSIDDFSGLVERAHE 179
>SB_313| Best HMM Match : Beta_elim_lyase (HMM E-Value=2.7)
Length = 384
Score = 283 bits (693), Expect = 6e-76
Identities = 139/248 (56%), Positives = 170/248 (68%), Gaps = 8/248 (3%)
Query: 404 VPSPDHDASAIKARAEEKKVNLRYFDEGAVGVALDETTTMKDIEDLLWIFDC--KNVQEV 461
V S + S + ARA E+K+NLR + + VGV+LDET +D++DLLW+F C K +
Sbjct: 1 VSSKTGNVSDMIARAAERKINLRKYSDDKVGVSLDETVKEQDLDDLLWVFGCDSKAAEVG 60
Query: 462 AQTEDILSKSVLKGPFRRTSPYLTHPVFNMHHSETKLVRYMKRLENKDISLVHSMIPLGS 521
++ KS+L PF+R S +LTHPVFN HH+ET +VRYMK LENKDISLV MIPL
Sbjct: 61 THLAEVPHKSLLNSPFKRLSSFLTHPVFNTHHAETNVVRYMKLLENKDISLVPLMIPL-- 118
Query: 522 CTMKLNSTTEMMPCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNS 581
LNSTTEMMP ++ F DIHP+AP++Q +GY L++E D C ITG+D V FQPNS
Sbjct: 119 ----LNSTTEMMPITWPRFADIHPYAPIQQAKGYLQLYDEFEKDFCEITGFDAVCFQPNS 174
Query: 582 GAQGEYAGLRTIKRYHEYRGDAGRNICLIPVSAHGTNPASAHMAGMRVCAIRVTPTGDID 641
GAQGEY GLR IK Y E G R +CLIPVSAHGTNPASA MAG V I+V +GDID
Sbjct: 175 GAQGEYTGLRVIKAYLENNGQGHRKVCLIPVSAHGTNPASAQMAGFNVQVIKVGKSGDID 234
Query: 642 MAHLKDMV 649
M LK V
Sbjct: 235 MEDLKKQV 242
Score = 124 bits (300), Expect = 3e-28
Identities = 52/74 (70%), Positives = 63/74 (85%)
Query: 649 VEEHSEKVSCLMLTYPSTFGVFEEKAADICALVHAHGGQVYLDGANMNAQVGLCRPGDYG 708
VE+ S++++C+M+TYPST G+FE DIC +VH HGGQVYLDGAN+NAQVGLCRP DYG
Sbjct: 279 VEKFSDELACIMVTYPSTNGIFEAGIRDICDIVHYHGGQVYLDGANLNAQVGLCRPADYG 338
Query: 709 SDVSHLNLHKTFCI 722
+DV H NLHKTFCI
Sbjct: 339 ADVMHSNLHKTFCI 352
>SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 40.3 bits (90), Expect = 0.007
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 618 NPASAHMAGM-RVCAIRVTPTGDIDMAHLKDMVEEHSE------KVSCLMLTYPSTFGVF 670
NP A G R +R P G +D+ +K + + S+ KV CL ++ +T G
Sbjct: 10 NPTVAVATGKKRTQQVRTNPDGTLDLDEIKSKIHDGSDSHYTHTKVICLESSHNATGGTV 69
Query: 671 E--EKAADICALVHAHGGQVYLDGANM-NAQVGLCRPGDYGSDVSHLNLHKTFCI 722
E + L AHG QV+LDGA + NA L P SD+S FC+
Sbjct: 70 LSLEYMKKVRELADAHGVQVHLDGARVFNAAASLGVP---VSDISQHVDSVMFCL 121
>SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 35.9 bits (79), Expect = 0.16
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 414 IKARAEEKKVNLRYFDEGAVGVALDETTTMKDIEDLLWIFDCKNVQEVAQTEDILSKSVL 473
I + + NL F E +GV +DETT + D L IF K + + LS +L
Sbjct: 420 ISTKIQASNTNLPNFTEVRIGVIIDETTRL-DFSTALQIFQSK-----IRNDKSLSPRIL 473
Query: 474 KGPFRRTSPYLT 485
R +PY+T
Sbjct: 474 NTTINRNTPYVT 485
>SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 34.7 bits (76), Expect = 0.37
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 498 LVRYMKRLENKDISLVHS--MIPLGSCTMKLNSTTEMMPCSYKHFTDIHPFAPLEQCQGY 555
LV ++K+ ++ + S + C+ KL S E+M H + HP PL QC
Sbjct: 518 LVMHLKQCQDYQVLFERSERLYSCDKCSKKLKSLNELMLHQCSHIAEAHPDRPLHQCYRL 577
Query: 556 HT 557
T
Sbjct: 578 ET 579
>SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062)
Length = 485
Score = 33.9 bits (74), Expect = 0.64
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 342 SNICTAQALLANMSAMYAVYHGPQGLREIATRVHNATLVLDHGIKM 387
S IC L S ++ +H PQG R IA +H +LV DH ++M
Sbjct: 189 SIICWLSPLAPQDSCLHLSHHLPQGTRRIAGMLHMGSLV-DHRVRM 233
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 30.7 bits (66), Expect = 5.9
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 322 DAYRLALQTREQHIR-RDKATSNICTAQALLANMSAMYAVYHGPQGLREIATRVHNATLV 380
+ YRL L R Q I ++ ATS + ++ A++ N + AVY P LR+ +A V
Sbjct: 19 EKYRLELANRGQAIVIQETATSAVISSIAIVGNFLVLLAVYRNP-NLRKTQVLYVSALAV 77
Query: 381 LD 382
D
Sbjct: 78 AD 79
>SB_54534| Best HMM Match : IRF (HMM E-Value=0.0051)
Length = 217
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 821 ERGLVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMS 862
ERG V +F I +DL+ ANIE G I + LM AP S
Sbjct: 103 ERGAVKSDFTI--KDLRSVANIERGAIWRGLMRVRIPAPPHS 142
>SB_49832| Best HMM Match : CXCXC (HMM E-Value=0.00036)
Length = 242
Score = 30.3 bits (65), Expect = 7.9
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 759 AAHSFGSVSAAPFGSSAILPISWAY-IKMMGPKGLRRATQVAILNANYMSRRLEDHYKTL 817
+ +F +A SS LP +W Y ++M G KGL + + + Y
Sbjct: 165 STRTFAFRAARRLTSSNHLPANWCYNLRMFGEKGLPDLIYTS--RPSGVGSMATTCYTGF 222
Query: 818 YKGERGLVAHEFII 831
G GLV+H F++
Sbjct: 223 ADGREGLVSHAFVV 236
>SB_18942| Best HMM Match : efhand (HMM E-Value=1.7e-30)
Length = 233
Score = 30.3 bits (65), Expect = 7.9
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 828 EFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVAGTLMIEPTESEDLQELDRFCD 887
+ + D D K+ +I+ ++ K + GF +AG + + E D F D
Sbjct: 93 KLVFDTFDTDKSGSIDGRELRKAMRTLGFKISKEG--IAGMIADLDADQSGRIEFDEFLD 150
Query: 888 ALITIRKEIKDIEDGLI 904
+I+ + + +D+ D ++
Sbjct: 151 FIISKQSDGRDVHDEIV 167
>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
Length = 746
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 821 ERGLVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMS 862
ERG V +F I +DL+ ANIE G I + LM AP S
Sbjct: 364 ERGAVKSDFTI--KDLRSVANIERGAIWRGLMRVRIPAPPHS 403
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,490,235
Number of Sequences: 59808
Number of extensions: 1366083
Number of successful extensions: 2393
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2374
Number of HSP's gapped (non-prelim): 19
length of query: 975
length of database: 16,821,457
effective HSP length: 89
effective length of query: 886
effective length of database: 11,498,545
effective search space: 10187710870
effective search space used: 10187710870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -