GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000391-TA|BGIBMGA000391-PA|IPR003437|Glycine cleavage
system P-protein
         (975 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...  1074   0.0  
U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical p...   558   e-159
AC006603-1|AAF39749.1|  772|Caenorhabditis elegans Hypothetical ...    33   0.99 
AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical ...    32   2.3  
Z78198-11|CAH04700.1|  579|Caenorhabditis elegans Hypothetical p...    31   3.0  
Z78198-10|CAB01568.1|  569|Caenorhabditis elegans Hypothetical p...    31   3.0  
AF083654-1|AAC32865.1|  569|Caenorhabditis elegans putative pota...    31   3.0  
AF125461-3|AAK18996.2|  282|Caenorhabditis elegans Hypothetical ...    30   6.9  
AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical ...    30   6.9  

>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 1074 bits (2659), Expect = 0.0
 Identities = 520/956 (54%), Positives = 669/956 (69%), Gaps = 19/956 (1%)

Query: 25  FPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQGLMNISEPISEYDLIERVRL 84
           F  RHIGPR  +   MLD +GYK LD LT   VP  I+ +  + +  P+ EY +++ +  
Sbjct: 30  FVDRHIGPRRLEQQQMLDFIGYKDLDDLTGTNVPNMIKAEKALELPAPLDEYKMLKELEA 89

Query: 85  IAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPYQPEVAQGRLESLLNYQTM 144
           IA +N+I+RSYIGMGY++  VP  I RN+ +N GW +QYTPYQ E++QGRLESLLN+QTM
Sbjct: 90  IAAQNKIYRSYIGMGYYDTIVPAVISRNILQNIGWISQYTPYQAEISQGRLESLLNFQTM 149

Query: 145 VSDMTGLDVANASLLDEGTAAAEALSLCHRHNKRTKFVVSERLHPQTLAVVHTRMDALGL 204
           +++MTGL   NASLLDE TA+AEA++L  R  KR K VV    HPQ L V+ TR   LG+
Sbjct: 150 IAEMTGLPTTNASLLDEATASAEAVALAARTTKRNKIVVDSFCHPQNLDVIRTRSGPLGI 209

Query: 205 DVLVVPDVRHVDFAQRDISAVLLQCPDTRGLVYDYSGLAAAAHEHGXXXXXXXXXXXXXX 264
           D+ V   +    F  + ++AV++Q P+T G ++ +  L  +AH++               
Sbjct: 210 DIEVSDSIEGYAFDDK-VAAVVVQYPNTEGRIHQFDELIESAHKNKSLVIMVCDLLSLTI 268

Query: 265 IRPPAECGAALAVGTSQRLGVPMGYGGPHAGFFA-----AEHQLVRLMPGRMVGVTRDTT 319
           +R P + GA +AVG++QR GVP+GYGGPHAGF A     A++ L R +PGR++GVT+D  
Sbjct: 269 LRSPGDLGADIAVGSAQRFGVPLGYGGPHAGFMAVAKHDAKNALGRNIPGRIIGVTKDAN 328

Query: 320 GRDAYRLALQTREQHIRRDKATSNICTAQALLANMSAMYAVYHGPQGLREIATRVHNATL 379
           G  A RLALQTREQHIRRDKATSNICTAQALLANMSAMYAVYHGPQ L EIA  VH +T 
Sbjct: 329 GNRALRLALQTREQHIRRDKATSNICTAQALLANMSAMYAVYHGPQRLTEIARGVHKSTA 388

Query: 380 VLDHGIKMRGHKQSNDVYFDTLYVVPSPDHDASAIKARAEEKKVNLRYFDEGAVGVALDE 439
            L + ++  GH+  +  YFDTL +           K RAEE K+N RY+++G +GV+LDE
Sbjct: 389 YLAYHLRNAGHEIVHKDYFDTLKIRLKDKAALEETKKRAEEMKMNFRYYEDGDIGVSLDE 448

Query: 440 TTTMKDIEDLLWIFDCKNVQEVAQTED----ILSKSVLKGPFRRTSPYLTHPVFNMHHSE 495
           T   +D+ D+++  +    ++V +  +    +    +   P  R+S +L HPVFN H SE
Sbjct: 449 TVKSEDLMDIIYTLNGATEKDVTKLREERWEVACPLIGNSPHSRSSLFLQHPVFNTHQSE 508

Query: 496 TKLVRYMKRLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSYKHFTDIHPFAPLEQCQGY 555
            +LVRYMKRLENKD+SLVHSMIPLGSCTMKLN++ E++P ++   + IHPFAP+EQ +GY
Sbjct: 509 QQLVRYMKRLENKDVSLVHSMIPLGSCTMKLNASAELIPITWPTLSSIHPFAPVEQAKGY 568

Query: 556 HTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTIKRYHEYRGDAGRNICLIPVSAH 615
             +F +L   LC ITGYD  S QPNSGA GEYAGL  I+ Y  ++G+  RNICLIP SAH
Sbjct: 569 SRIFGDLEKWLCEITGYDNFSLQPNSGANGEYAGLLAIRNYLIHKGEEQRNICLIPTSAH 628

Query: 616 GTNPASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAA 675
           GTNPASA MA M+V  +     G+I+   L    E++S +++ +M+TYPST GVFE    
Sbjct: 629 GTNPASAQMANMKVVVVDSDHHGNINYKDLAAKAEKYSNQLAAIMVTYPSTHGVFESSIR 688

Query: 676 DICALVHAHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXX 735
           D+C  VH HGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCI             
Sbjct: 689 DVCDKVHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGVGPIG 748

Query: 736 VKAHLAPFLPSHPVVDPLADLGDAAHSFGSVSAAPFGSSAILPISWAYIKMMGPKGLRRA 795
           VK HLAPFLP H VV P+          GSV++AP+GS++IL I+WAYI+MMGP GLR A
Sbjct: 749 VKKHLAPFLPGHSVV-PV-----DGRKVGSVASAPYGSASILAITWAYIRMMGPVGLREA 802

Query: 796 TQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFIIDVRDLKKTANIEPGDIAKRLMDFG 855
           +QVAILNANYM++RLE+ Y+ +YK E+GLVAHEFI+D +  KK   IE  DIAKRLMD+G
Sbjct: 803 SQVAILNANYMAKRLENDYRIVYKDEQGLVAHEFIMDCKPFKK-HGIEVVDIAKRLMDYG 861

Query: 856 FHAPTMSWPVAGTLMIEPTESEDLQELDRFCDALITIRKEIKDIEDGLIDKRLNPLKLAP 915
           FH+PTMSWPV   LMIEPTESED  E+DR  +AL++IR+EI+ +E+G +DK LNPLK+AP
Sbjct: 862 FHSPTMSWPVHDCLMIEPTESEDKAEMDRLVEALLSIREEIRQVENGSLDKHLNPLKMAP 921

Query: 916 HTQEEVISEEWNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYGDKHLVCTCPPV 971
           HT E+V S+ WN PY+RE AAFP P+     K WPTVGR+DD YGD++LVCTCPP+
Sbjct: 922 HTLEKVTSDNWNMPYSRELAAFPKPWC--THKAWPTVGRVDDQYGDRNLVCTCPPI 975


>U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical
           protein R12C12.1b protein.
          Length = 444

 Score =  558 bits (1378), Expect = e-159
 Identities = 265/448 (59%), Positives = 327/448 (72%), Gaps = 9/448 (2%)

Query: 524 MKLNSTTEMMPCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGA 583
           + L   T + P ++   + IHPFAP+EQ +GY  +F +L   LC ITGYD  S QPNSGA
Sbjct: 2   LALKFITIIKPITWPTLSSIHPFAPVEQAKGYSRIFGDLEKWLCEITGYDNFSLQPNSGA 61

Query: 584 QGEYAGLRTIKRYHEYRGDAGRNICLIPVSAHGTNPASAHMAGMRVCAIRVTPTGDIDMA 643
            GEYAGL  I+ Y  ++G+  RNICLIP SAHGTNPASA MA M+V  +     G+I+  
Sbjct: 62  NGEYAGLLAIRNYLIHKGEEQRNICLIPTSAHGTNPASAQMANMKVVVVDSDHHGNINYK 121

Query: 644 HLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADICALVHAHGGQVYLDGANMNAQVGLCR 703
            L    E++S +++ +M+TYPST GVFE    D+C  VH HGGQVYLDGANMNAQVGLCR
Sbjct: 122 DLAAKAEKYSNQLAAIMVTYPSTHGVFESSIRDVCDKVHEHGGQVYLDGANMNAQVGLCR 181

Query: 704 PGDYGSDVSHLNLHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVVDPLADLGDAAHSF 763
           PGDYGSDVSHLNLHKTFCI             VK HLAPFLP H VV P+          
Sbjct: 182 PGDYGSDVSHLNLHKTFCIPHGGGGPGVGPIGVKKHLAPFLPGHSVV-PV-----DGRKV 235

Query: 764 GSVSAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERG 823
           GSV++AP+GS++IL I+WAYI+MMGP GLR A+QVAILNANYM++RLE+ Y+ +YK E+G
Sbjct: 236 GSVASAPYGSASILAITWAYIRMMGPVGLREASQVAILNANYMAKRLENDYRIVYKDEQG 295

Query: 824 LVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVAGTLMIEPTESEDLQELD 883
           LVAHEFI+D +  KK   IE  DIAKRLMD+GFH+PTMSWPV   LMIEPTESED  E+D
Sbjct: 296 LVAHEFIMDCKPFKK-HGIEVVDIAKRLMDYGFHSPTMSWPVHDCLMIEPTESEDKAEMD 354

Query: 884 RFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTREQAAFPAPFVK 943
           R  +AL++IR+EI+ +E+G +DK LNPLK+APHT E+V S+ WN PY+RE AAFP P+  
Sbjct: 355 RLVEALLSIREEIRQVENGSLDKHLNPLKMAPHTLEKVTSDNWNMPYSRELAAFPKPWC- 413

Query: 944 GETKIWPTVGRIDDMYGDKHLVCTCPPV 971
              K WPTVGR+DD YGD++LVCTCPP+
Sbjct: 414 -THKAWPTVGRVDDQYGDRNLVCTCPPI 440


>AC006603-1|AAF39749.1|  772|Caenorhabditis elegans Hypothetical
           protein B0524.4 protein.
          Length = 772

 Score = 33.1 bits (72), Expect = 0.99
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 833 VRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVA---GTLMIEPTESEDLQELDRFCDAL 889
           +RD +  +  E  D+ KRL D      ++   +A   GT  +E      L E+ +    +
Sbjct: 499 IRDFRVYSKSELSDVIKRLPDVQKKLKSLKVVIAGMKGTQSVESDAFSTLSEIGKLSSVI 558

Query: 890 ITIRKEIKDIEDGLID-KRLNPLKL 913
            T  + + +++  +++ KRLNP  L
Sbjct: 559 GTASRSVSNMQMAIVEHKRLNPHSL 583


>AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical
           protein R05G9R.1 protein.
          Length = 789

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 738 AHLAPFLPSHPVVDPLADLGDAAHSFGSVSAAPFGSSAILPIS---WAY-------IKMM 787
           A L+P   S    + L  L  AA++FGSV   P  S +  P+    W         +K+M
Sbjct: 553 APLSPGRLSEQQNEDLIPLPTAAYTFGSVDVTPSPSISTTPLEDQLWPLPIRKRHRLKLM 612

Query: 788 GPKGLRRATQVAILNANYM-SRRLEDHYKTLYKG 820
           G K   +   + IL  N   ++++E + +TL  G
Sbjct: 613 GAKMREKTKPIVILPMNKKNAKKMEQYKRTLQTG 646


>Z78198-11|CAH04700.1|  579|Caenorhabditis elegans Hypothetical
           protein F55C5.3b protein.
          Length = 579

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 489 FNMHHSETKLVRYM-KRLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSYKHFTDIHPFA 547
           FN +  +  L R M +R+  + I  V S + L S    L+ TT  +    +H    HP +
Sbjct: 287 FNENFCQKSLQRDMQRRIRRERIRRVGSELSLSSTAPLLHRTTTQLSNPVQHIESNHPLS 346

Query: 548 PLE 550
           PL+
Sbjct: 347 PLD 349


>Z78198-10|CAB01568.1|  569|Caenorhabditis elegans Hypothetical
           protein F55C5.3a protein.
          Length = 569

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 489 FNMHHSETKLVRYM-KRLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSYKHFTDIHPFA 547
           FN +  +  L R M +R+  + I  V S + L S    L+ TT  +    +H    HP +
Sbjct: 287 FNENFCQKSLQRDMQRRIRRERIRRVGSELSLSSTAPLLHRTTTQLSNPVQHIESNHPLS 346

Query: 548 PLE 550
           PL+
Sbjct: 347 PLD 349


>AF083654-1|AAC32865.1|  569|Caenorhabditis elegans putative
           potassium channel subunitn2P24 protein.
          Length = 569

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 489 FNMHHSETKLVRYM-KRLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSYKHFTDIHPFA 547
           FN +  +  L R M +R+  + I  V S + L S    L+ TT  +    +H    HP +
Sbjct: 287 FNENFCQKSLQRDMQRRIRRERIRRVGSELSLSSTAPLLHRTTTQLSNPVQHIESNHPLS 346

Query: 548 PLE 550
           PL+
Sbjct: 347 PLD 349


>AF125461-3|AAK18996.2|  282|Caenorhabditis elegans Hypothetical
           protein Y8A9A.5 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 70  SEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNM 113
           S  +SE DLI+ +  I E +EI   Y    YHN    H   + +
Sbjct: 93  SANLSERDLIDHIMDITENSEIKELYFKSDYHNVIFLHNCFKGL 136


>AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical
           protein R05C11.2 protein.
          Length = 379

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 394 NDVYFDTLYVVPSPDHDASAIKARAEEKKVNLRYFDEGAVGVALDETTTMKDIEDLLWIF 453
           N +Y   +++V SPD      K       VN   F EG +G+     T   + +  +W F
Sbjct: 281 NVIYLRDMFLV-SPDF--LQFKVTFVNSDVNNSIFQEGFLGIPFRIVTDSTNNQPSIWFF 337

Query: 454 DCKN 457
           +C N
Sbjct: 338 NCMN 341


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,705,976
Number of Sequences: 27539
Number of extensions: 999432
Number of successful extensions: 1954
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1937
Number of HSP's gapped (non-prelim): 10
length of query: 975
length of database: 12,573,161
effective HSP length: 88
effective length of query: 887
effective length of database: 10,149,729
effective search space: 9002809623
effective search space used: 9002809623
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)