GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000391-TA|BGIBMGA000391-PA|IPR003437|Glycine cleavage
system P-protein
         (975 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   5.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   5.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 842 IEPGDIAKRLMDFGFHAPTMSWPVAGTLMIE 872
           I  G    R MD   H   MSWPV    ++E
Sbjct: 84  IRHGRRQSRSMDLNAHREQMSWPVKKEAVVE 114


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 334 HIRRDKATSNICTAQA 349
           H+ +D++TS +C AQA
Sbjct: 248 HVAQDESTSLVCVAQA 263


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 334 HIRRDKATSNICTAQA 349
           H+ +D++TS +C AQA
Sbjct: 248 HVAQDESTSLVCVAQA 263


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 883 DRFCDALITIRKEIKDIEDGLIDKRL 908
           D FC  +    KEI  I D L++ +L
Sbjct: 7   DTFCKKMRKATKEIHSISDSLVNAKL 32


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,174
Number of Sequences: 429
Number of extensions: 11319
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 4
length of query: 975
length of database: 140,377
effective HSP length: 64
effective length of query: 911
effective length of database: 112,921
effective search space: 102871031
effective search space used: 102871031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)