GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000390-TA|BGIBMGA000390-PA|IPR000728|AIR synthase
related protein, IPR010918|AIR synthase related protein, C-terminal,
IPR010073|Phosphoribosylformylglycinamidine synthase, eukaryotes and
proteobacteria
         (1340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...   642   0.0  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    29   3.3  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    29   4.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    29   5.8  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    28   7.7  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    28   7.7  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score =  642 bits (1586), Expect = 0.0
 Identities = 436/1304 (33%), Positives = 660/1304 (50%), Gaps = 83/1304 (6%)

Query: 75   ETIFKSNDNSQLLIEIGPRFNFSTADSSNSVQICESVGLRDVVRLEVSTRYLITFGKQKN 134
            E+ FK +  +  ++ + PR    +  SS +  I    G +DV+R+E    Y + F  + +
Sbjct: 59   ESEFKPDGTT--MVYVFPRPGTISPWSSKATNIANVCGYKDVIRIERGIAYSVVF--KDD 114

Query: 135  VTEKHFENLAAVLHDRMTQCVYTKDNLPRKSFNEGLPKDLEPWFVVPLQ----EQGISAM 190
            ++E+  ++    L+DRMT+ +  K     + F++  P  L    +   Q    +     +
Sbjct: 115  ISEEMLKSALNHLYDRMTEALRFKLPEEDEVFDKHEPAPLVRIELNCGQGGDKQAATERL 174

Query: 191  RKVNDKLGLAFDTWDMEFYMDLFVNK--LK-RDPTSVELFDLAQSNSEHSRHWFFKGKLV 247
               N K GLA    ++++ ++ + ++  LK R+PT VELF   Q NSEH RH  F     
Sbjct: 175  NHANKKFGLALAPDEIDYLVECYTSEPSLKSREPTDVELFMFGQVNSEHCRHKIFNADWT 234

Query: 248  LDGKEINESLIDMVASTQKTSNNNNVIKFGDNSSAIKGFQHTILRPTNVRGPSQVIQKKT 307
            +DG++ + SL  M+ +T   +    +  + DN++  +G   T+  P N      +   K 
Sbjct: 235  IDGEKKDYSLFKMIRNTHLKNPQYTISAYSDNAAVFEGNSGTLFAPVN-----GIWSMKD 289

Query: 308  ES-DIIFTAETHNMPTAVAPFSGATTGTGGRIRDVQGVGRGGHTVAGTAGYSVGNLHIPG 366
            E  + +   ETHN PTAV+PF GA TG+GG IRD   VG+G  + AG AGYSV +L+IPG
Sbjct: 290  EPVEFLGKVETHNHPTAVSPFPGAATGSGGEIRDEGAVGQGSLSKAGLAGYSVSDLNIPG 349

Query: 367  YDLPWEEKGWEYPSNFATPLQIIIEASNGASDYGNKFGEPVISGFVQSYGLK--NADNTR 424
            Y  PWE    + P + AT L I++EA  G+S + N+FG P I+G+ +++ ++    D T 
Sbjct: 350  YKQPWELDVGK-PYHIATSLDIMLEAPIGSSAFNNEFGRPCINGYFRTFCMEVPRGDGTL 408

Query: 425  E--EFVKPIMFSGGIGYM--PHSMIKKNKPDKGMLLVKXXXXXXXXXXXXXXXXXXXXXX 480
            E   + KPIM +GGIG +   H+  K   P   ++++                       
Sbjct: 409  EIRGYHKPIMAAGGIGRIRKQHAFKKSIAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468

Query: 481  XDARDHALDFGAVQRGDAEMGNRLNRVVRGCLESDVNPVESIHDQGAGGNGNVLKELVEP 540
             +     LDF +VQRG+ EM  R   V+  C   D N ++SIHD GAGG  N L ELV  
Sbjct: 469  EE-----LDFASVQRGNPEMQRRAQMVIDACTTMDENIIQSIHDVGAGGVSNALPELVHD 523

Query: 541  EG--AVVFTKEFQLGDPTITTLELWGAEYQENDALLCSKANRHILEEICRRERCPVSFVG 598
             G  A    ++    +P+++ +++W  E QE   L     +    + IC RERCP   VG
Sbjct: 524  AGLGARFELRDIPCIEPSMSPMQIWCCESQERYVLSVKSEDLDTFKSICERERCPYGVVG 583

Query: 599  EVTGDGYMSLIEDSYTEKFLDRSERLKLESKSKLPYDLHLEAVLGNMPRKTFDLQTEKRT 658
              T +  + L +  Y    +D    L +E     P  +   A    +P   FD  + K  
Sbjct: 584  YSTVEQRLILTDRLYNTTPID----LPMEVLFGKPPKMSRVAETQTIPLSKFD-SSLKSY 638

Query: 659  KLPLSFPKDITVKSALDRVLRLVNVASKRYLTNKVDRCVTGLVAQQQCVGPLHTPLADCA 718
              P S P    +  A++RVLR+  VASK +L    DR VTGL+A+ Q VGP   P+AD  
Sbjct: 639  LAPSSDP----ILDAVERVLRMPAVASKSFLITIGDRSVTGLIARDQMVGPWQVPVADVG 694

Query: 719  IIALSYYDLV--GSATSIGTQNIKGLLDPAAGARLSLGEALTNLVFAGISELEDVKCSGN 776
            +   SY   +  G A ++G + I  L+  AA AR+++ E + NLV A I  L+ ++ S N
Sbjct: 695  VTVTSYGKGINTGEALAMGEKPISALVSAAASARMAVAECIMNLVAASIPALDRIRLSAN 754

Query: 777  WMWA-GKTGVEXXXXXXXXXXXXXXMRALGVAVDGGKDSLSMCA---HVAGEK-VKSPGT 831
            WM A    G                  +LG+++  GKDS+SM         EK V +P +
Sbjct: 755  WMAAPSHPGEGAKLYEAVQAIGLELCPSLGISIPVGKDSMSMSMKWNEDGREKSVTAPLS 814

Query: 832  LVVSTYAPCPDITVKIEPALKEE----NSALVHAPVSPGKYRLGGSALAQCYKQLGDNXX 887
            L+++ ++P  D+     P L++     +++L+   ++ GK RLGGS LAQ YKQLGD   
Sbjct: 815  LIITGFSPVDDLYSIWTPQLRKVEDIGSTSLIFIDLANGKQRLGGSILAQSYKQLGDEVP 874

Query: 888  XXXXXXXXKSLFKITQKLLKEKKLISGHDISEGGFITTVLEMGIGGVRGLNLHVNVAANV 947
                    K+   +  +L K   + + HD S+GG   T+ EM   G  G+   ++  ++ 
Sbjct: 875  DLDNLDTFKNFINVITQLHKTNYIQAYHDKSDGGLFVTLSEMAFAGHVGIECELDSLSSD 934

Query: 948  SPIEALFNEELGIVLEVSKNDLPYVLSEYNNNGVGAQHIGYTGKY--GMDSQVVINLNGV 1005
            + I ALFNEELG V++V   D+  VL  +  NG+    +   GK   G    +  + +G 
Sbjct: 935  N-IAALFNEELGAVIQVCDRDIAKVLELFAANGLSTC-VHRIGKVLSGQAQTISFSRSGK 992

Query: 1006 NVLDTVLIDVFRMWEETSYRLECLQANTDCVLQEWKVLEKRK--GATYNVTFDP----TA 1059
             +  +    +  +W ETSY+++ ++ N +C  QE + +      G  Y++TFDP    TA
Sbjct: 993  IIFKSTRSKLHGIWHETSYKMQEIRDNPECARQEMENIADNNDPGLGYHLTFDPNVSVTA 1052

Query: 1060 AVIKTKSIKVAVLREEGINGDREMIASLMLANFDVFDVTMSDLQNKKITLDAFQGVVFPG 1119
             +  T   KVA+LRE+G+NG  EM  +   + F   DV M+D+ + ++ LD F G+   G
Sbjct: 1053 DLALTSRPKVAILREQGVNGYLEMAYAFYASGFTAVDVHMTDILSGRVHLDDFVGIAACG 1112

Query: 1120 GFSYADTLGSAKGWAAGILFSESLSSQFAHF-KDRKDTFSLGVCNGCQLMAMLGWVDPDS 1178
            GFSY D LGS  GWA  IL  E   ++F  F  +RKDTF LG+CNGCQL + L  + P +
Sbjct: 1113 GFSYGDVLGSGNGWATSILLHEDARNEFYRFFNERKDTFGLGICNGCQLFSRLKSLIPGA 1172

Query: 1179 NSKGSNKAQIFLDHNSSERFECRWSAVKIHENENKEDVWFRGMGGSVLGVWVAHGEGRFT 1238
                  K+      N S ++E R   +KI E    + ++   M GS L V VAHGEGR  
Sbjct: 1173 ------KSWPMFTFNESAQYEGRAVMLKIDETSGSKSIFTESMAGSSLPVVVAHGEGRAV 1226

Query: 1239 VADGSLLDKLYKNGQVAVQYVDDDGKPTEVYPMNPNGSPDGLAGVRSRDGRHIAMMPHPE 1298
                S  ++  K G   + YV++  + T  YP NPNGS D +AGVRS  GR +AMMPHPE
Sbjct: 1227 FDSESDYEQFKKEGLDLIYYVNNYNERTSRYPFNPNGSRDAIAGVRSPCGRFLAMMPHPE 1286

Query: 1299 RCVLRWQCPAPCPTVTNPSVRNSQAS------PWLRLFQNAYSW 1336
            R VL+         V N    +S+AS      PW+RLFQ+A  W
Sbjct: 1287 RVVLK---------VANSYYPHSKASEWGVHGPWIRLFQSARKW 1321


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 941 VNVAANVSPIEALFNEELGIVLEVSKNDLPYVLSEYNNNGVGA 983
           +N+ A V+ +EA   + L + L ++ NDL YVLS  N + + A
Sbjct: 214 INIIAGVNGVEA--GQSLVLALVIACNDLFYVLSPKNKDALRA 254


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 327

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 1133 WAAGILFSESLSSQFAH--FKDRKDTFSLGVCNGCQLMAM 1170
            W AG++FS+ + S   H  F +RKD   L + +GC ++ +
Sbjct: 159  WDAGVVFSKKILSDDWHYSFSNRKDINVLELGSGCGIVGI 198


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 372 EEKGWEYPSNFATPLQIIIEASNGASDYGNKFGEPVISGFV 412
           E+K  +    F  PL+I++E +N  S  G   G   I  F+
Sbjct: 825 EKKNVKKKGTFGVPLEILVERNNAQSTVGTGVGVKHIPAFI 865


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 9   TEAFSLHKTNEILQKLKFVDSDIKDLSTELCYHVELAEGCEYLNINQIKVLKWLLSSPLQ 68
           T ++S+ K ++I++ LK    D       +  H+ LA   +Y    ++K +K  +   L 
Sbjct: 187 TSSYSVQKKDDIVEYLK----DYALRGNNISAHISLATIYQYGTPGKLKDIKLAVKHYLA 242

Query: 69  PQAVRNETIFKSNDNSQLLIEIGPRFNFSTADSSNSVQI 107
              + N  I  S   +   I   PR   +T +++NS+ I
Sbjct: 243 AIRLVNSGIPDSPSEAIKSIHNNPRHAPTTKETANSLSI 281


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 12/89 (13%)

Query: 18  NEILQKLKFVDSDIKDLSTELCYHVELAEGCEYLNINQIKVLKWLLSSPLQPQAVRNETI 77
           N +L+++K    + K  S +L  + E++EG EY  I + K          +P  VR +++
Sbjct: 296 NIVLREVKVSFENEKIESDDLDKNEEISEGEEYTPIEESK----------EPITVRRDSV 345

Query: 78  FKSNDNSQLLIEIGPRFNFS--TADSSNS 104
            + +++S  L ++    NF+    DS NS
Sbjct: 346 IQIDESSAGLTDVISELNFTNHNDDSKNS 374


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,000,169
Number of Sequences: 5004
Number of extensions: 260090
Number of successful extensions: 622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 6
length of query: 1340
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1259
effective length of database: 1,957,154
effective search space: 2464056886
effective search space used: 2464056886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)