Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000389-TA|BGIBMGA000389-PA|undefined
         (155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   3.0  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    25   5.2  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   6.8  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   6.8  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    24   9.0  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 27   NLLADETNTFEETDDLKTAANAWY-IYSNFDRNY 59
            N +A+  N F     + T    WY IY+NFD NY
Sbjct: 1064 NRVAEMVNNFFYKSVVWTFTLFWYQIYNNFDANY 1097


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 19   KTEAALHENLLADETNTFEETDDLKTAA--NAWYIYSNFD 56
            K    LH++LL +    FE  DD+  A+    W I   +D
Sbjct: 1231 KGRYTLHDSLLCELLAYFETLDDISVASRYKGWVITDEYD 1270


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 17  ALKTEAALHENLLADETNTFEETDDLKTAANAWYI 51
           A++  A   E   AD TN+ +  + L T  N W++
Sbjct: 225 AVEWPAPEEETRKADVTNSLDPANVLSTELNTWHV 259


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 33  TNTFEETDDLKTAANAWYI 51
           T  F  TDD+   A++WY+
Sbjct: 243 TGVFSSTDDIPEWASSWYL 261


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 19  KTEAALHENLLAD-ETNTFEETDDLKTAANAWYIYSNFDRNYPDGSSSVYRH 69
           +T+ AL +  L D  T T ++ D    A N   + SN DR         +RH
Sbjct: 455 ETDIALPDIALPDVATPTADDQDPSTAATNEESVVSNEDRTSKKAGKKHHRH 506


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 33  TNTFEETDDLKTAANAWYI 51
           T  F  TDD+   A++WY+
Sbjct: 243 TGVFSSTDDIPEWASSWYL 261


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 42  LKTAANAWYIYSNFDRNYPDGSSSVYRHGFVT 73
           + +A NA+Y     D NY D  S   ++  VT
Sbjct: 228 ISSAVNAFYYRDPIDENYCDRMSKFNQNDLVT 259


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,430
Number of Sequences: 5004
Number of extensions: 15486
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 7
length of query: 155
length of database: 2,362,478
effective HSP length: 67
effective length of query: 88
effective length of database: 2,027,210
effective search space: 178394480
effective search space used: 178394480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)