Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000389-TA|BGIBMGA000389-PA|undefined
(155 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 31 0.42
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879... 30 0.96
12_01_0147 + 1138382-1138532,1138660-1138967,1139233-1139934 27 5.1
11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961 27 5.1
06_02_0272 + 13646814-13647305,13647983-13648612 27 6.8
04_04_0508 + 25746949-25747117,25748561-25748826,25748934-25749335 27 6.8
06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215 27 9.0
06_01_0029 - 288676-289287,289441-289733,289842-290031 27 9.0
05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634 27 9.0
04_04_0634 - 26777889-26778452,26778526-26778797,26778905-267791... 27 9.0
04_03_1016 + 21742060-21742219,21742301-21742596,21742705-217427... 27 9.0
03_06_0439 + 33952765-33953238,33953368-33953844 27 9.0
03_03_0184 + 15228045-15228405,15228725-15228883,15228984-152292... 27 9.0
03_01_0136 + 1069136-1069292,1070783-1071060,1071246-1071602,107... 27 9.0
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 31.1 bits (67), Expect = 0.42
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 38 ETDDLKTAANAWYIYSNFDRNYPDGS 63
E L+T W+ +S DR YP+GS
Sbjct: 487 ERSALRTGDKQWFFFSRMDRKYPNGS 512
>01_01_1111 -
8791925-8792649,8793506-8793890,8794341-8794618,
8794998-8795163
Length = 517
Score = 29.9 bits (64), Expect = 0.96
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 41 DLKTAANAWYIYSNFDRNYPDGSSS 65
D+ T N W+ ++ DR YP+GS S
Sbjct: 59 DVPTQDNKWHFFAARDRKYPNGSRS 83
>12_01_0147 + 1138382-1138532,1138660-1138967,1139233-1139934
Length = 386
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 47 NAWYIYSNFDRNYPDGS 63
N WY +S DR YP+G+
Sbjct: 58 NEWYFFSPRDRKYPNGA 74
>11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961
Length = 384
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 47 NAWYIYSNFDRNYPDGS 63
N WY +S DR YP+G+
Sbjct: 58 NEWYFFSPRDRKYPNGA 74
>06_02_0272 + 13646814-13647305,13647983-13648612
Length = 373
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 36 FEETDDLKTAANAWYIYSNFDRNYPDG 62
+E + K WY YS DR YP G
Sbjct: 66 WELPEKAKMGEKEWYFYSLRDRKYPTG 92
>04_04_0508 +
25746949-25747117,25748561-25748826,25748934-25749335
Length = 278
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 36 FEETDDLKTAANAWYIYSNFDRNYPDGS 63
+E D K A+ WY +S DR Y GS
Sbjct: 53 WELPDVAKLTASEWYFFSFRDRKYATGS 80
>06_03_0306 -
19396423-19397112,19397645-19397916,19398047-19398215
Length = 376
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 47 NAWYIYSNFDRNYPDGS 63
N WY +S+ D+ YP G+
Sbjct: 67 NEWYFFSHKDKKYPTGT 83
>06_01_0029 - 288676-289287,289441-289733,289842-290031
Length = 364
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 47 NAWYIYSNFDRNYPDGS 63
N WY +S+ D+ YP G+
Sbjct: 78 NEWYFFSHKDKKYPTGT 94
>05_04_0352 +
20533846-20534038,20534117-20534391,20535134-20535634
Length = 322
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 49 WYIYSNFDRNYPDGS 63
WY +S DR YP+GS
Sbjct: 74 WYFFSPRDRKYPNGS 88
>04_04_0634 -
26777889-26778452,26778526-26778797,26778905-26779117,
26779497-26779578
Length = 376
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 47 NAWYIYSNFDRNYPDGS 63
N WY +S+ D+ YP G+
Sbjct: 109 NEWYFFSHKDKKYPTGT 125
>04_03_1016 +
21742060-21742219,21742301-21742596,21742705-21742758,
21743480-21743503
Length = 177
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 1 MNLKIPIIFLFGCTFAALKTEAALHENLLAD 31
+ LK +IF G F A+KT +HE L D
Sbjct: 95 VGLKKTLIFFIGEPFEAIKTNWVMHEYHLMD 125
>03_06_0439 + 33952765-33953238,33953368-33953844
Length = 316
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 46 ANAWYIYSNFDRNYPDGS 63
A WY ++ DR YP+GS
Sbjct: 70 AREWYFFTPRDRKYPNGS 87
>03_03_0184 +
15228045-15228405,15228725-15228883,15228984-15229258,
15229346-15229594,15229670-15229788,15229874-15229972,
15230068-15230176,15230281-15230421
Length = 503
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 30 ADETNTFEETDDLKTAANAWYIYSNFDRNYPDGSSSVYRHGFVTG 74
++ T+ ++ T D TAA+A+ +N+ +P+ R F+TG
Sbjct: 191 SNTTSDYDNTGDTSTAADAYTFLTNWLERFPEYKG---RDFFITG 232
>03_01_0136 +
1069136-1069292,1070783-1071060,1071246-1071602,
1071706-1072119,1072221-1072302,1072429-1073093
Length = 650
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 49 WYIYSNFDRNYPDGS 63
WY +S DR YP+GS
Sbjct: 64 WYFFSPRDRKYPNGS 78
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,258
Number of Sequences: 37544
Number of extensions: 80659
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 16
length of query: 155
length of database: 14,793,348
effective HSP length: 76
effective length of query: 79
effective length of database: 11,940,004
effective search space: 943260316
effective search space used: 943260316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -