GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000389-TA|BGIBMGA000389-PA|undefined
         (155 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z93778-8|CAB07848.4|  437|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U95181-1|AAD00776.1|  437|Caenorhabditis elegans 2,5 dihydroxyph...    27   6.0  
AL034364-5|CAA22255.4|  437|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF136150-1|AAF61419.1|  437|Caenorhabditis elegans homogentisate...    27   6.0  
U56860-5|AAP40524.1|  685|Caenorhabditis elegans Intermediate fi...    27   7.9  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    27   7.9  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    27   7.9  

>AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical
           protein C52E2.7 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 23  ALHENLLADETNTFEETDD-LKTAANAWYIYSNFDRNYPDGSSS 65
           +L E  +A E  TFE  +  L    N  Y  SNF R Y DGSSS
Sbjct: 221 SLKEMNIAMEEGTFENYEKVLLNGIN--YRTSNFSRIYADGSSS 262


>Z93778-8|CAB07848.4|  437|Caenorhabditis elegans Hypothetical
           protein W06D4.1 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 18  LKTEAALHENLLADETNTFEETDDLKTAANAWYIYSNFDRNY 59
           + + A L    +A+ T +F     L  A   W +Y N D++Y
Sbjct: 381 MASNADLKPQRVAEGTMSFMFESSLNMAITNWAVYQNVDKDY 422


>U95181-1|AAD00776.1|  437|Caenorhabditis elegans 2,5
           dihydroxyphenylacetate oxidase protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 18  LKTEAALHENLLADETNTFEETDDLKTAANAWYIYSNFDRNY 59
           + + A L    +A+ T +F     L  A   W +Y N D++Y
Sbjct: 381 MASNADLKPQRVAEGTMSFMFESSLNMAITNWAVYQNVDKDY 422


>AL034364-5|CAA22255.4|  437|Caenorhabditis elegans Hypothetical
           protein W06D4.1 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 18  LKTEAALHENLLADETNTFEETDDLKTAANAWYIYSNFDRNY 59
           + + A L    +A+ T +F     L  A   W +Y N D++Y
Sbjct: 381 MASNADLKPQRVAEGTMSFMFESSLNMAITNWAVYQNVDKDY 422


>AF136150-1|AAF61419.1|  437|Caenorhabditis elegans homogentisate
           1,2-dioxygenase protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 18  LKTEAALHENLLADETNTFEETDDLKTAANAWYIYSNFDRNY 59
           + + A L    +A+ T +F     L  A   W +Y N D++Y
Sbjct: 381 MASNADLKPQRVAEGTMSFMFESSLNMAITNWAVYQNVDKDY 422


>U56860-5|AAP40524.1|  685|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform c protein.
          Length = 685

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 19  KTEAALHENLLADETNTFEETDDLKTAAN 47
           + ++ L +NL+  E+ TFEE   + T+ N
Sbjct: 150 RLDSGLSQNLIVSESTTFEELTTITTSNN 178


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 19  KTEAALHENLLADETNTFEETDDLKTAAN 47
           + ++ L +NL+  E+ TFEE   + T+ N
Sbjct: 150 RLDSGLSQNLIVSESTTFEELTTITTSNN 178


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 19  KTEAALHENLLADETNTFEETDDLKTAAN 47
           + ++ L +NL+  E+ TFEE   + T+ N
Sbjct: 150 RLDSGLSQNLIVSESTTFEELTTITTSNN 178


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,873
Number of Sequences: 27539
Number of extensions: 77858
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 8
length of query: 155
length of database: 12,573,161
effective HSP length: 76
effective length of query: 79
effective length of database: 10,480,197
effective search space: 827935563
effective search space used: 827935563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)