Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000388-TA|BGIBMGA000388-PA|IPR000618|Insect cuticle
protein, IPR008160|Collagen triple helix repeat
         (1624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.003
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     34   1.1  
SB_46026| Best HMM Match : Collagen (HMM E-Value=0.00013)              33   1.4  
SB_36039| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   1.9  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 32   3.3  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 32   4.4  
SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   5.8  
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   5.8  
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)                       31   7.7  

>SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 42.3 bits (95), Expect = 0.003
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 48  VPAKKTVEVPLKKASEVPVKKASEVPTKKPHVEPAREGRQLSPYPGQQ-DNEVVVDIQDD 106
           VP +K+ +VP KK+ +VP +K+ +VP KK    P  + +Q+S    +Q   +    + D+
Sbjct: 216 VPGEKSKQVPDKKSKQVPGEKSKQVPDKKSKQVPGEKSKQVSDKKSKQVPGKKSKQVPDE 275

Query: 107 EKKQ 110
           + KQ
Sbjct: 276 KSKQ 279



 Score = 37.1 bits (82), Expect = 0.12
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 48  VPAKKTVEVPLKKASEVPVKKASEVPTKKPHVEPAREGRQLSPYPGQQDN 97
           VP KK+ +VP +K+ +V  KK+ +VP KK    P  + +Q S    +Q++
Sbjct: 240 VPDKKSKQVPGEKSKQVSDKKSKQVPGKKSKQVPDEKSKQASGKKSKQES 289



 Score = 36.3 bits (80), Expect = 0.20
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 51  KKTVEVPLKKASEVPVKKASEVPTKKPHVEPAREGRQLSPYPGQQDNEV 99
           KK+ +VP +K+ +VP KK+ +VP +K    P ++ +Q+   PG++  +V
Sbjct: 211 KKSKQVPGEKSKQVPDKKSKQVPGEKSKQVPDKKSKQV---PGEKSKQV 256



 Score = 34.3 bits (75), Expect = 0.82
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 48  VPAKKTVEVPLKKASEVPVKKASEVPTKKPHVEPAREGRQLSPYPG-QQDNEVVVDIQDD 106
           VP +K+ +V  KK+ +VP KK+ +VP +K      ++ +Q S   G ++ NE    I + 
Sbjct: 248 VPGEKSKQVSDKKSKQVPGKKSKQVPDEKSKQASGKKSKQESNTAGPKKKNECYRKILNK 307

Query: 107 EKK 109
           +++
Sbjct: 308 KRR 310


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 313  SYRPDGSYGPDGSYQPEGSYGPDGS 337
            +Y  +G+YG +G+Y  +G+YG DGS
Sbjct: 1126 AYGSNGAYGSNGAYGSDGTYGSDGS 1150


>SB_46026| Best HMM Match : Collagen (HMM E-Value=0.00013)
          Length = 174

 Score = 33.5 bits (73), Expect = 1.4
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDGSW 338
           DG Y  DG YG DG Y  +G YG DG +
Sbjct: 117 DGLYGLDGVYGLDGLYGLDGVYGLDGPY 144



 Score = 33.5 bits (73), Expect = 1.4
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDG 336
           DG Y  DG YG DG Y  +G YG DG
Sbjct: 123 DGVYGLDGLYGLDGVYGLDGPYGLDG 148



 Score = 33.5 bits (73), Expect = 1.4
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDG 336
           DG Y  DG YG DG Y  +G YG DG
Sbjct: 129 DGLYGLDGVYGLDGPYGLDGLYGLDG 154



 Score = 33.5 bits (73), Expect = 1.4
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDG 336
           DG Y  DG YG DG Y  +G YG DG
Sbjct: 135 DGVYGLDGPYGLDGLYGLDGLYGLDG 160



 Score = 33.5 bits (73), Expect = 1.4
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDG 336
           DG Y  DG YG DG Y  +G YG DG
Sbjct: 141 DGPYGLDGLYGLDGLYGLDGVYGLDG 166



 Score = 33.1 bits (72), Expect = 1.9
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDG 336
           DG Y  DG YG DG Y  +G YG DG
Sbjct: 63  DGLYGLDGVYGLDGLYGLDGLYGLDG 88



 Score = 33.1 bits (72), Expect = 1.9
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDG 336
           DG Y  DG YG DG Y  +G YG DG
Sbjct: 69  DGVYGLDGLYGLDGLYGLDGLYGLDG 94



 Score = 33.1 bits (72), Expect = 1.9
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDG 336
           DG Y  DG YG DG Y  +G YG DG
Sbjct: 75  DGLYGLDGLYGLDGLYGLDGVYGLDG 100



 Score = 33.1 bits (72), Expect = 1.9
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDG 336
           DG Y  DG YG DG Y  +G YG DG
Sbjct: 81  DGLYGLDGLYGLDGVYGLDGVYGLDG 106


>SB_36039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 33.1 bits (72), Expect = 1.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPD 335
           D  Y PD  Y PD  Y P+  Y PD
Sbjct: 29  DDRYAPDDRYAPDDRYAPDDRYAPD 53



 Score = 33.1 bits (72), Expect = 1.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPD 335
           D  Y PD  Y PD  Y P+  Y PD
Sbjct: 35  DDRYAPDDRYAPDDRYAPDDRYAPD 59



 Score = 33.1 bits (72), Expect = 1.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPD 335
           D  Y PD  Y PD  Y P+  Y PD
Sbjct: 41  DDRYAPDDRYAPDDRYAPDDRYAPD 65



 Score = 33.1 bits (72), Expect = 1.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPD 335
           D  Y PD  Y PD  Y P+  Y PD
Sbjct: 47  DDRYAPDDRYAPDDRYAPDDRYAPD 71



 Score = 31.5 bits (68), Expect = 5.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 314 YRPDGSYGPDGSYQPEGSYGPD 335
           Y PD  Y PD  Y P+  Y PD
Sbjct: 2   YAPDDRYAPDDRYAPDDRYAPD 23


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 32.3 bits (70), Expect = 3.3
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 1459 PPTYVPSTQMP--PFPIYVIPF-PLPIVPSPGSCPCYLLN 1495
            P T +PSTQ+P   FP    P  P PI P+P +C  Y  N
Sbjct: 285  PSTQLPSTQLPSTQFPSTPAPINPTPINPTPINCSSYQPN 324


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 1451 VSSGTGVQPPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASS 1510
            VS G  + PP   P    PP      P P  ++P P + P  L+ P       N  Q   
Sbjct: 172  VSPGI-LAPPPAPPGVLAPP------PAPPGVLPPPPAPPGALIPPPPAPPTFNNNQNMG 224

Query: 1511 HPANGQSQGYAPYGIIGF 1528
            +P+NG + GY   G +G+
Sbjct: 225  YPSNG-NMGYPSNGNMGY 241


>SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 50  AKKTVEVPLKKASEVPVKKASEVPTKKPHVEPARE 84
           AKK  + P KKA+  P KK+++ P KK   + A++
Sbjct: 174 AKKPKKSPAKKAARKPAKKSAKKPAKKAGAKKAKK 208


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 72  VPTKKPHVE--PAREGRQLSPYPGQQDNEVVVDIQDDEKKQYYETNYDTSAY 121
           +PT++ H E  P+++ ++  P P + + E   ++ ++EKK   E     +AY
Sbjct: 190 IPTEEGHSEGPPSKQEKKEEPEPEKMETETEPELAENEKKAMEEKELGNAAY 241


>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
          Length = 315

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 1459 PPTYVPSTQMPPFPIYVIP--FPLPIVP---SPGSCPCYLLNPGNNGTATNEM 1506
            PP   P TQ PP P    P   P PI P   +P    C ++N    G  +N+M
Sbjct: 198  PPIDPPRTQPPPIPPIDPPRTQPPPIFPQPTTPAPTKCQVINTKETGEVSNKM 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.134    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,149
Number of Sequences: 59808
Number of extensions: 655400
Number of successful extensions: 1989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1933
Number of HSP's gapped (non-prelim): 53
length of query: 1624
length of database: 16,821,457
effective HSP length: 92
effective length of query: 1532
effective length of database: 11,319,121
effective search space: 17340893372
effective search space used: 17340893372
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 67 (31.1 bits)