GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000388-TA|BGIBMGA000388-PA|IPR000618|Insect cuticle
protein, IPR008160|Collagen triple helix repeat
         (1624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    35   0.11 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    33   0.33 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   2.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   5.3  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    28   9.3  

>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 60  KASEVPVKKASE-VPTKKPHVEPAREGRQLSPYPGQQDNEVVV--DIQDDEKKQ 110
           K S++     S+ +P K  H+EP    R LS  P  +D+++ +  D  DDEKKQ
Sbjct: 239 KLSDIQTSSPSQDIPAK--HLEPLHLNRSLSSSPSSEDSDLSLSSDSDDDEKKQ 290


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
            Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 1453 SGTGVQPPTYVPSTQMPPFPIYVIPFPLPI--VPSPGSCPCYLLNPGNNGTATNEMQASS 1510
            +G  V P   V  ++ PP P    P P PI  VP+  + P    NP    T +   QAS+
Sbjct: 341  AGNQVMPTPQVQGSRPPPPP----PMPAPIYNVPNVPTVPTVSPNPFLQPTFSGTSQASA 396

Query: 1511 HPA 1513
            HP+
Sbjct: 397  HPS 399


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 557

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 1456 GVQPPTYVPSTQM--PPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHPA 1513
            G QP    P  +M  PP  +Y    PLP  P P + P    +P  +         ++ P 
Sbjct: 280  GSQPALVTPKHKMNVPPMGMY----PLPFSPLPSAAPPIPFSPNVSSHPHMAFLPATVPT 335

Query: 1514 NGQSQGYAPY 1523
            +    G+ PY
Sbjct: 336  HSAPPGFVPY 345


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 1459 PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCP 1490
            PP  +PS   PP P   +P   P VP P S P
Sbjct: 1022 PPVPLPSADAPPIP---VPSTAPPVPIPTSTP 1050


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 109  KQYYETNYDTSAYGFGYDVGPNGQFHHENRGPDGVV 144
            K Y E++  +  YG  +D+ P G +  E R P G V
Sbjct: 1055 KYYGESSVKSKFYGKSFDISPLGTWFLELRHPSGEV 1090


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.134    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,539
Number of Sequences: 5004
Number of extensions: 81863
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 11
length of query: 1624
length of database: 2,362,478
effective HSP length: 83
effective length of query: 1541
effective length of database: 1,947,146
effective search space: 3000551986
effective search space used: 3000551986
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)