GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000388-TA|BGIBMGA000388-PA|IPR000618|Insect cuticle
protein, IPR008160|Collagen triple helix repeat
         (1624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132...    40   0.013
01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690...    34   0.82 
07_03_1433 + 26513728-26514135,26525534-26526280                       33   1.4  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    32   4.4  
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351     31   5.8  
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    31   5.8  

>03_01_0164 -
           1326002-1326409,1326410-1326428,1326523-1326647,
           1327482-1327530,1328834-1328855,1328969-1329071
          Length = 241

 Score = 40.3 bits (90), Expect = 0.013
 Identities = 16/25 (64%), Positives = 18/25 (72%)

Query: 310 QDGSYRPDGSYGPDGSYQPEGSYGP 334
           Q G+Y P GSY P GSY P+GSY P
Sbjct: 210 QGGAYPPPGSYPPPGSYPPQGSYPP 234



 Score = 35.1 bits (77), Expect = 0.47
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 314 YRPDGSYGPDGSYQPEGSYGPDGSW 338
           Y   G+Y P GSY P GSY P GS+
Sbjct: 208 YPQGGAYPPPGSYPPPGSYPPQGSY 232



 Score = 33.9 bits (74), Expect = 1.1
 Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 312 GSYRPDGSYGPDGSY-QPEGSYG 333
           GSY P GSY P GSY  P+G YG
Sbjct: 218 GSYPPPGSYPPQGSYPPPQGYYG 240


>01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,
            6905885-6905926,6906001-6906128,6906530-6906710,
            6906801-6906979,6907469-6907717,6907950-6908193
          Length = 530

 Score = 34.3 bits (75), Expect = 0.82
 Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 1460 PTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHPANGQSQG 1519
            PT    +  PP P   +P  LPI  S  S      +P +N  A     AS   A G   G
Sbjct: 36   PTSASPSPSPPAPHLAVPLILPIT-SSSSASAAAASPESNRGARMAAAASGGKAGG-GGG 93

Query: 1520 YAPYGIIGFIPVVFVPYCP-GNGSAMNTAQQNFPQ 1553
                G   F+  VF    P GNG    T +   PQ
Sbjct: 94   LGKGGGPAFVGQVFTMLDPSGNGLMAVTTRFELPQ 128


>07_03_1433 + 26513728-26514135,26525534-26526280
          Length = 384

 Score = 33.5 bits (73), Expect = 1.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 1459 PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCP 1490
            PPTY P +  PP P  V P P    P P + P
Sbjct: 45   PPTYPPPSSTPPSPAPVSPSPPTTYPPPSTTP 76


>09_06_0277 - 21983049-21983080,21983250-21984788,21986619-21986655,
            21987612-21987665,21987781-21987893,21988272-21988660,
            21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 1458 QPPTYVPS-TQMPPFPIYVIPFPLPIVPSP 1486
            QPP+YVPS  +  P P    P+P  I PSP
Sbjct: 702  QPPSYVPSPPEYAPEPPVYAPYPPGITPSP 731


>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
          Length = 415

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 51  KKTVEVPLKKASEVPVKKASEVPTKKPHVEPAREGRQLSPYPGQQDNEVVVDIQDDEKKQ 110
           +++  VP+K  +   V   S  P   P V+PA    Q +P P ++    V  ++ D   Q
Sbjct: 124 EQSTPVPIKSPAAEAVCMPSGSPAMAPPVQPAPHVEQSTPLPAKEP-AAVAKVEADAIVQ 182

Query: 111 YYETNYDTSAYGFGYDVGPNGQFHHENRGPDG 142
               N D      G    P GQ     +G +G
Sbjct: 183 -TAANADADQALLGKGATPGGQGCTGQKGEEG 213


>07_03_1710 - 28903614-28903673,28904982-28905146,28905453-28905638,
            28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 1459 PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNPGNNGTATNEMQASSHP 1512
            PP   P    PP P      P P+ P P + P Y   P + G A  E  A + P
Sbjct: 70   PPAPTPPQTRPPSPPPQQQQPRPVSPPPVAEPYYWPKPYDYGDAPREQPAYATP 123


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.134    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,516,235
Number of Sequences: 37544
Number of extensions: 581937
Number of successful extensions: 1328
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 18
length of query: 1624
length of database: 14,793,348
effective HSP length: 92
effective length of query: 1532
effective length of database: 11,339,300
effective search space: 17371807600
effective search space used: 17371807600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 67 (31.1 bits)