GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000388-TA|BGIBMGA000388-PA|IPR000618|Insect cuticle
protein, IPR008160|Collagen triple helix repeat
         (1624 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    35   0.42 
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    34   0.97 
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    34   0.97 
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    31   5.2  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    31   9.0  

>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
            protein F41E6.11 protein.
          Length = 316

 Score = 35.1 bits (77), Expect = 0.42
 Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 18/102 (17%)

Query: 1455 TGVQPPTY--VPSTQMPPF-PIYVIPFPLPI---VPSPGSC--PCYLLNP-GNNGT---- 1501
            T V  PTY  VP    P   P+Y  P P P+    P+P     PC   NP G  GT    
Sbjct: 178  TPVYQPTYCAVPPCPAPAATPVYAQPAPRPMPVYAPAPACAQPPCPAYNPYGYQGTPGYA 237

Query: 1502 -ATNE----MQASSHPANGQSQGYAPYGIIGFIPVVFVPYCP 1538
             A N     +++    A G +QGYAP    G+ P     Y P
Sbjct: 238  PAYNPYSYVLRSPVAAAPGYAQGYAPAYAQGYAPAYAPSYAP 279


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 33.9 bits (74), Expect = 0.97
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 73  PTKKPHVEPAREGRQLSPYPGQQDNEVVVDIQDDEKKQYYETNYDTSAYGFGYDVGPNGQ 132
           P ++ +  P ++G+Q SPYP  Q  +     Q   ++   + +Y     G G    P GQ
Sbjct: 633 PPQQAYRYPPQQGQQYSPYPPPQQQQ-----QHQAQQAQSQAHYGPPGGGQGPPPPPQGQ 687

Query: 133 FHHENRGPDGVVYG 146
            ++    P G  YG
Sbjct: 688 QYYGGPPPPGQPYG 701


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 33.9 bits (74), Expect = 0.97
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 73  PTKKPHVEPAREGRQLSPYPGQQDNEVVVDIQDDEKKQYYETNYDTSAYGFGYDVGPNGQ 132
           P ++ +  P ++G+Q SPYP  Q  +     Q   ++   + +Y     G G    P GQ
Sbjct: 633 PPQQAYRYPPQQGQQYSPYPPPQQQQ-----QHQAQQAQSQAHYGPPGGGQGPPPPPQGQ 687

Query: 133 FHHENRGPDGVVYG 146
            ++    P G  YG
Sbjct: 688 QYYGGPPPPGQPYG 701


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 31.5 bits (68), Expect = 5.2
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 311 DGSYRPDGSYGPDGSYQPEGSYGPDG 336
           DG Y P G YG  G Y P G YG  G
Sbjct: 220 DGGYGPSGGYG--GGYGPGGGYGMGG 243


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical protein
            ZK287.4 protein.
          Length = 1208

 Score = 30.7 bits (66), Expect = 9.0
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 1451 VSSGTGVQPPTY--VPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNP 1496
            + +   VQ PT+  VPS   PP   YVI  P+P +      P + + P
Sbjct: 643  IKTENSVQQPTHYIVPSQSSPPPDPYVISNPIPTLSPTAGTPSFNIYP 690


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.134    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,516
Number of Sequences: 27539
Number of extensions: 500200
Number of successful extensions: 2068
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2058
Number of HSP's gapped (non-prelim): 19
length of query: 1624
length of database: 12,573,161
effective HSP length: 91
effective length of query: 1533
effective length of database: 10,067,112
effective search space: 15432882696
effective search space used: 15432882696
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 66 (30.7 bits)