GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000388-TA|BGIBMGA000388-PA|IPR000618|Insect cuticle
protein, IPR008160|Collagen triple helix repeat
         (1624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    33   1.6  
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ...    33   2.1  
At5g51105.1 68418.m06337 expressed protein                             32   2.8  
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    31   4.8  
At1g26250.1 68414.m03202 proline-rich extensin, putative similar...    31   6.4  
At5g58540.1 68418.m07330 protein kinase family protein contains ...    31   8.4  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 1459 PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYLLNP 1496
            PP   P +  PP P+Y  P P P +  P   PC   +P
Sbjct: 592  PPPPTPVSSPPPTPVYSPPPPPPCIEPPPPPPCIEYSP 629


>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
            arabinogalactan protein [Arabidopsis thaliana]
            gi|10880495|gb|AAG24277; contains proline-rich extensin
            domains, INTERPRO:IPR002965
          Length = 164

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 1454 GTGVQPPTYVPSTQMPPFPIYVIPFPLPIVPSP 1486
            G+ V PP   P   M P P+ + P P+P+ P P
Sbjct: 46   GSSVPPPVMSPMPMMTPPPMPMTPPPMPMTPPP 78


>At5g51105.1 68418.m06337 expressed protein
          Length = 123

 Score = 32.3 bits (70), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 1465 STQMPPFPIYVIPFPLPIVPSPG 1487
            + Q+P FP  + PFP P  PSPG
Sbjct: 20   NAQLPQFPPIMFPFPNPFKPSPG 42


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
            transfer protein (LTP) family protein similar to
            SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
            Lycopersicon esculentum, proline-rich cell wall protein
            [Medicago sativa] GI:3818416; contains Pfam profile
            PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 1457 VQPPTYVPSTQMPPFP---IYVIPFPLPIVPSPGSCPCYLLNPG 1497
            + PPT  P    PP P   +   P P P  P P +CP   L  G
Sbjct: 215  ITPPTPTPPVVTPPTPTPPVVTPPTPTPPTPIPETCPIDTLKLG 258


>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
            extensin gi|1165322|gb|AAB53156; contains proline-rich
            extensin domains, INTERPRO:IPR002965
          Length = 443

 Score = 31.1 bits (67), Expect = 6.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)

Query: 1459 PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCPCYL 1493
            PP YV S+  PP  +Y  P P P V SP   P Y+
Sbjct: 142  PPPYVYSSPPPPPYVYKSPPPPPYVYSPPPPPPYV 176


>At5g58540.1 68418.m07330 protein kinase family protein contains Pfam
            domain, PF00069: Protein kinase domain
          Length = 484

 Score = 30.7 bits (66), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 1459 PPTYVPSTQMPPFPIYVIPFPLPIVPSPGSCP 1490
            PP     TQ P  P  + P P+P+ P+P   P
Sbjct: 98   PPRSGVPTQTPETPPAITPLPVPLAPAPSPSP 129


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.134    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,160
Number of Sequences: 28952
Number of extensions: 450189
Number of successful extensions: 1208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 68
length of query: 1624
length of database: 12,070,560
effective HSP length: 91
effective length of query: 1533
effective length of database: 9,435,928
effective search space: 14465277624
effective search space used: 14465277624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 66 (30.7 bits)