Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000386-TA|BGIBMGA000386-PA|IPR008147|Glutamine
synthetase, beta-Grasp
         (134 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    91   7e-20
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    27   1.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   3.0  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   5.3  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       24   7.0  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    24   9.3  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 90.6 bits (215), Expect = 7e-20
 Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 2/104 (1%)

Query: 5   PIALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDG 64
           P+    A + KY DL      ++A Y+W+DG   +LRSK  T D  P     L +W FDG
Sbjct: 8   PLLSKAAILNKYADLPQN-GKVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDG 65

Query: 65  SNTAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQP 108
           S+T QA  +NSDT + P  +Y+DPFRRG++ILVLA  Y  +  P
Sbjct: 66  SSTGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSP 109


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 80  FPEVIYHDPFRRGNHILVLADTYQFNYQPTSKQMSCTPGDFLKNR 124
           FP       +RR N+    ++ Y+ +Y+P+  Q   +PG++ K R
Sbjct: 202 FPSNNKDGGYRRNNYRDRDSNRYRNSYRPSRPQREHSPGNYRKER 246


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 82  EVIYHDPFRRGNHILVLADTYQFNYQPTSK 111
           E IY D  R+G+ +L L   Y  NY P ++
Sbjct: 632 EKIYKDYGRKGSRVLALGYKYFKNYIPENQ 661


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 100 DTYQFNYQPTSKQMSCTP 117
           D YQ+NY P +++ S  P
Sbjct: 454 DFYQYNYDPNTRKFSRVP 471


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 71 NPDNSDTFIFPEVIYHDPFRRGNH 94
          NP +   F+FP +   DP    NH
Sbjct: 53 NPKSIRNFLFPPIAISDPKEAQNH 76


>SPCC24B10.21 |tpi1|tpi|triosephosphate
          isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 63 DGSNTAQANPDNSDTFIFPEVIY 85
          +G NT + N  + +T IFP+ +Y
Sbjct: 25 EGLNTTKLNVGDVETVIFPQNMY 47


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,551
Number of Sequences: 5004
Number of extensions: 30065
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 6
length of query: 134
length of database: 2,362,478
effective HSP length: 66
effective length of query: 68
effective length of database: 2,032,214
effective search space: 138190552
effective search space used: 138190552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)