Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000386-TA|BGIBMGA000386-PA|IPR008147|Glutamine
synthetase, beta-Grasp
         (134 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)             117   4e-27
SB_37542| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_15889| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_44455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_8143| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.2  
SB_30023| Best HMM Match : DUF1250 (HMM E-Value=6.9)                   27   6.9  
SB_35260| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.1  
SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.1  

>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score =  117 bits (281), Expect = 4e-27
 Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 3/105 (2%)

Query: 13  MRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANP 72
           + KY+ L+   D + A Y+W+DG+G  +R K RT D  PK H+DLPIW FDGS+TAQA  
Sbjct: 15  LEKYQRLDQG-DRVQALYIWVDGSGEGIRCKSRTLDKPPKSHEDLPIWNFDGSSTAQAEG 73

Query: 73  DNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQP--TSKQMSC 115
            NSD ++ P  I+ DPFR GN+ILVL +TYQF+++P  T+K+ +C
Sbjct: 74  CNSDVYLHPINIFKDPFRGGNNILVLCETYQFDHKPTRTNKRKTC 118


>SB_37542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 55  KDLPIWY-FDGSNTAQANPDNSDTFIFPEVIYHDPF 89
           + LP W  FD S T +  PDN+DT +FP   +  PF
Sbjct: 220 RPLPHWIVFDCSLTQR--PDNTDTRMFPSSSHPKPF 253


>SB_15889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 49  FIPKDHKDLPIWYFDGSNTAQ----ANPDNSDTFIFPEVIYHD 87
           +I  D    PIW +D SN       A PD    +IF +V+ HD
Sbjct: 105 WIHADGNISPIWQYDRSNYGVHLWIAAPDPEKPWIFAKVVVHD 147


>SB_44455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 55  KDLPIWY-FDGSNTAQANPDNSDTFIFPEVIYHDPF 89
           + LP W  FD S T    PDN+DT +FP   +  PF
Sbjct: 473 RPLPNWIVFDCSLTQW--PDNTDTRMFPSSSHPKPF 506


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 55   KDLPIWY-FDGSNTAQANPDNSDTFIFPEVIYHDPF 89
            + LP W  FD S T    PDN+DT +FP   +  PF
Sbjct: 1598 RPLPHWIVFDCSFTQW--PDNTDTRMFPSSSHPKPF 1631


>SB_8143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 64  GSNTAQANPDNSDTFIFPEVIYHDPFRRG--NHILVLADTYQFNYQP 108
           GS+ A +NP  +DTF+F + +     R+G  + + V  +  ++N  P
Sbjct: 83  GSSRAGSNPARNDTFLFEKSLIKITKRKGRTSKVAVAEELSRWNRNP 129


>SB_30023| Best HMM Match : DUF1250 (HMM E-Value=6.9)
          Length = 244

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 55  KDLPIWY-FDGSNTAQANPDNSDTFIFPEVIYHDPF 89
           + LP W  FD S T    PDN+DT +FP   +  PF
Sbjct: 202 RPLPNWIVFDCSLTQW--PDNTDTRMFPSSRHPKPF 235


>SB_35260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 16 YEDLEVPCDAILASYVWLDGT 36
          Y +++  C A+   YVW DGT
Sbjct: 8  YANIDSRCGAVRVRYVWNDGT 28


>SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 55  KDLPIWY-FDGSNTAQANPDNSDTFIFPEVIYHDP 88
           + LP W  FD S T    PDN+DT +FP + +  P
Sbjct: 220 RPLPHWIVFDCSLTQW--PDNTDTRMFPSIKHPKP 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,890,608
Number of Sequences: 59808
Number of extensions: 202132
Number of successful extensions: 362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 11
length of query: 134
length of database: 16,821,457
effective HSP length: 75
effective length of query: 59
effective length of database: 12,335,857
effective search space: 727815563
effective search space used: 727815563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)