Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000386-TA|BGIBMGA000386-PA|IPR008147|Glutamine
synthetase, beta-Grasp
         (134 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   4.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.0  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 14 RKYEDLEVPCDAILASYVWLDGTGINL 40
          R  + L +    ILAS+VW+    ++L
Sbjct: 5  RPMQALSIRHAVILASFVWIYALSLSL 31


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 51 PKDHKDLPIW 60
          P +H+DLPI+
Sbjct: 61 PPEHRDLPIY 70


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 19   LEVPCDAILASY 30
            +EVP DA++A Y
Sbjct: 1341 MEVPSDALIALY 1352


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,801
Number of Sequences: 429
Number of extensions: 1981
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 134
length of database: 140,377
effective HSP length: 52
effective length of query: 82
effective length of database: 118,069
effective search space:  9681658
effective search space used:  9681658
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)