Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000386-TA|BGIBMGA000386-PA|IPR008147|Glutamine
synthetase, beta-Grasp
(134 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 96 1e-20
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 90 5e-19
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 88 2e-18
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 66 7e-12
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 34 0.044
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 28 2.2
11_06_0372 + 22781438-22781977 28 2.9
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 95.9 bits (228), Expect = 1e-20
Identities = 40/79 (50%), Positives = 57/79 (72%)
Query: 24 DAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEV 83
D I+A Y+W+ GTGI+LRSK RT +D +LP W +DGS+T QA ++S+ ++P+
Sbjct: 816 DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQA 875
Query: 84 IYHDPFRRGNHILVLADTY 102
I+ DPFR GN+ILV+ DTY
Sbjct: 876 IFKDPFRGGNNILVMCDTY 894
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 90.2 bits (214), Expect = 5e-19
Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 24 DAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEV 83
D I+A Y+W+ G+GI+LRSK RT D LP W +DGS+T QA ++S+ ++P+
Sbjct: 17 DKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 84 IYHDPFRRGNHILVLADTY--QFNYQPTSKQMS 114
I+ DPFRRG++ILV+ D Y Q PT+K+ S
Sbjct: 77 IFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHS 109
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 88.2 bits (209), Expect = 2e-18
Identities = 36/79 (45%), Positives = 55/79 (69%)
Query: 24 DAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEV 83
+ I+A Y+W+ G+G++LRSK RT D LP W +DGS+T QA ++S+ ++P+
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 84 IYHDPFRRGNHILVLADTY 102
I+ DPFR+GN+ILV+ D Y
Sbjct: 77 IFKDPFRKGNNILVMCDCY 95
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 66.5 bits (155), Expect = 7e-12
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 38 INLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEVIYHDPFRRGNHILV 97
++L+ + T D LP W FDGS+T QA D+S+ + P+ I+ DPFR+G +ILV
Sbjct: 58 LHLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILV 117
Query: 98 LADTYQFNYQP 108
+ D Y N +P
Sbjct: 118 MCDCYAPNGEP 128
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 33.9 bits (74), Expect = 0.044
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 6 IALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIW 60
+AL+ + R+ LE P I AS + L +L + + FD P +H+DLP+W
Sbjct: 118 VALHASLFRR--GLESPDRFIRASLLSLYAAAGDLPAARQVFDLSPPNHRDLPLW 170
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 15 KYEDLEVPCDAILASYVW 32
K + L+VPCD++ AS+ W
Sbjct: 345 KLDPLQVPCDSVKASFFW 362
>11_06_0372 + 22781438-22781977
Length = 179
Score = 27.9 bits (59), Expect = 2.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 70 ANPDNSDTFIFPEVIY---HDPFRRGNHILVLADTYQFNYQPTSKQMSCTPGDFL 121
+NP+N + FPE + D RR N + +AD F YQ + + G FL
Sbjct: 70 SNPNNDNDDGFPEELKASCRDSIRRSNILRKVADDRFFEYQSEVRAAMESSGRFL 124
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.139 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,169,012
Number of Sequences: 37544
Number of extensions: 173141
Number of successful extensions: 276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 8
length of query: 134
length of database: 14,793,348
effective HSP length: 75
effective length of query: 59
effective length of database: 11,977,548
effective search space: 706675332
effective search space used: 706675332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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