GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000386-TA|BGIBMGA000386-PA|IPR008147|Glutamine
synthetase, beta-Grasp
         (134 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical...   102   1e-22
AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical...   102   1e-22
Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...    99   5e-22
Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical pr...    90   4e-19
Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical pr...    87   4e-18
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...    87   5e-18
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    27   4.5  
U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U40942-8|AAC47073.2|  684|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator prot...    27   6.0  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    26   7.9  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    26   7.9  
AC006617-4|AAF39771.1|  291|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28b protein.
          Length = 385

 Score =  102 bits (244), Expect = 1e-22
 Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 7   ALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSN 66
           A +K  ++K+ +L+       A Y+W+DG+G N+R+K RTFDF P D + LPIW FDGS+
Sbjct: 10  ATDKQVLQKFLNLDQK-GMYQALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSS 68

Query: 67  TAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTS 110
           T QA   +SD ++ P  IY DPFR+G + LV+ +TY    +PT+
Sbjct: 69  TGQAEGADSDVYLKPVAIYPDPFRQGKNKLVMCETYDNKKKPTA 112


>AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28a protein.
          Length = 388

 Score =  102 bits (244), Expect = 1e-22
 Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 7   ALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSN 66
           A +K  ++K+ +L+       A Y+W+DG+G N+R+K RTFDF P D + LPIW FDGS+
Sbjct: 13  ATDKQVLQKFLNLDQK-GMYQALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSS 71

Query: 67  TAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTS 110
           T QA   +SD ++ P  IY DPFR+G + LV+ +TY    +PT+
Sbjct: 72  TGQAEGADSDVYLKPVAIYPDPFRQGKNKLVMCETYDNKKKPTA 115


>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score =   99 bits (238), Expect = 5e-22
 Identities = 49/107 (45%), Positives = 65/107 (60%)

Query: 4   TPIALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFD 63
           T + L  A + ++  L      I A+YVW+DGTG NLRSK RTFD +PK  +D PIW +D
Sbjct: 8   TRMPLGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYD 67

Query: 64  GSNTAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTS 110
           GS+T QA   +SD ++ P   Y DPF  G + LV+ DT     QPT+
Sbjct: 68  GSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTA 114


>Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical
           protein F26D10.10 protein.
          Length = 369

 Score = 90.2 bits (214), Expect = 4e-19
 Identities = 41/107 (38%), Positives = 65/107 (60%)

Query: 4   TPIALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFD 63
           T + L +A +  +  L        A+YVW+DGTG  LR+K RTF+  P+   + PIW +D
Sbjct: 8   TRLPLGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYD 67

Query: 64  GSNTAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTS 110
           GS+T QA   NSD ++ P  ++ DPF +G+++LV+ +T     +PT+
Sbjct: 68  GSSTGQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTA 114


>Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical
           protein C28D4.3 protein.
          Length = 368

 Score = 87.0 bits (206), Expect = 4e-18
 Identities = 41/107 (38%), Positives = 64/107 (59%)

Query: 4   TPIALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFD 63
           T + L +A +  +  L        A+YVW+DGTG +LR+K RT +  P+   + PIW +D
Sbjct: 8   TRLPLGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYD 67

Query: 64  GSNTAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTS 110
           GS+T QA+  NSD ++ P  ++ DPF  G ++LV+ DT     +PT+
Sbjct: 68  GSSTGQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTA 114


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score = 86.6 bits (205), Expect = 5e-18
 Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 30  YVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEVIYHDPF 89
           Y+W+D T  N+R K +TFDF PK   DLPIW FDG++T Q+  + SD +I P  +Y DPF
Sbjct: 35  YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94

Query: 90  RRGNHILVLADTYQFNYQ--PTSKQMSC 115
           R G + + L +T   + +  PT+ +  C
Sbjct: 95  RPGPNKIALCETLTHDNKPHPTNTRQQC 122


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
          protein Y59C2A.3 protein.
          Length = 759

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 44 DRTFDFIPKDHK-DLPIWYFDGSNTAQANPDNSDTFIFP 81
          D  ++ + +DH  +    Y  G   A ANP+N  + +FP
Sbjct: 7  DTNYEVVTQDHLVEFDYVYAPGEGEADANPENLFSNVFP 45


>U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical
           protein F48B9.1 protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 64  GSNTAQANPDNSDTFIFPEVIYHDPFRRG-NHILVLADTYQFNYQPTSKQMSCTPGD--F 120
           G   A++N D+  T +F   I    FRR  +H  +    +  N  PT + + CTP +  F
Sbjct: 287 GHERARSN-DSRATSLFSSSIAS--FRRPISHFSIDNSCFDINDPPTQRSLMCTPVEKMF 343

Query: 121 LKN 123
           +KN
Sbjct: 344 VKN 346


>U40942-8|AAC47073.2|  684|Caenorhabditis elegans Hypothetical
           protein K02E10.7 protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 18  DLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLP 58
           D  +P +++  S V  DG+ I++ + D  +  +  DH + P
Sbjct: 399 DRFIPAESLEKSTVQRDGSEISIETLDEGYKSVASDHPEEP 439


>AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator protein
           1.2 protein.
          Length = 522

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 39  NLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANP 72
           N+RSKD  F     DH+ LP  YF+ S     +P
Sbjct: 236 NIRSKDHIFQLQKDDHEVLP--YFEFSFAKHDSP 267


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 79  IFPEVIYHDPFRRGNHILVLADTYQFNYQPT--SKQMSCTPGDFL 121
           I P+   H P +  N+ +    TY     P+  +K M C PGDFL
Sbjct: 615 IIPDCYCHQPCQETNYEV----TYSSARWPSGSAKVMECLPGDFL 655


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 79  IFPEVIYHDPFRRGNHILVLADTYQFNYQPT--SKQMSCTPGDFL 121
           I P+   H P +  N+ +    TY     P+  +K M C PGDFL
Sbjct: 577 IIPDCYCHQPCQETNYEV----TYSSARWPSGSAKVMECLPGDFL 617


>AC006617-4|AAF39771.1|  291|Caenorhabditis elegans Hypothetical
           protein C39B5.7 protein.
          Length = 291

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 27  LASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDGSNTAQANPDNSDTFIFPEVIYH 86
           L S V   G  +N  S D   DF+  D     I Y D S TA       +T I  +    
Sbjct: 28  LRSAVDQSGNHLNRISFDICNDFVAMDLNGSQIKYTDVSGTAYVTYKGRETKIEEDNFMR 87

Query: 87  DPFRRGNHILVLADTYQF-NYQPTSKQ-MSCTPGDFLKNR 124
             F     +L     + F NY    +Q ++ +  D L+N+
Sbjct: 88  AAFNDLASVLKNVKKFVFQNYSKVKQQAITSSINDMLENK 127


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,694,325
Number of Sequences: 27539
Number of extensions: 158929
Number of successful extensions: 244
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 13
length of query: 134
length of database: 12,573,161
effective HSP length: 74
effective length of query: 60
effective length of database: 10,535,275
effective search space: 632116500
effective search space used: 632116500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)