Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000385-TA|BGIBMGA000385-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine, IPR001314|Peptidase S1A, chymotrypsin
         (297 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    79   4e-17
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 79.4 bits (187), Expect = 4e-17
 Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 19/182 (10%)

Query: 117 CGGTLVSLRWVVTAAHCV----RRRLYVRLGEHDLLLRNYGELEM--KVTEAVVHPRYD- 169
           CG T++S R+V+TAAHC+      +L + +GEHD   +      +   + + ++HP+YD 
Sbjct: 188 CGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDI 247

Query: 170 ---PDTVINDVAMLRLPTSARPDLGHGIACLPNPH-QSLPPHTSCIILGWGKKRPTDVHG 225
               D  IND+A+L+     +     G ACLP  H       +   +LGWG    T  +G
Sbjct: 248 IEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGH---TSFNG 304

Query: 226 --TRVLHEAQVSTIQQGVCRRSYWQYAITDDMVCAGRGRRDSCAGDSGGPLLCRD-RSNR 282
             + +L +  ++ + Q  C + Y    +  + +CA    +D+C  DSGGP+L ++ R+ R
Sbjct: 305 MLSHILQKTTLNMLTQVECYKYYGNIMV--NAMCAYAKGKDACQMDSGGPVLWQNPRTKR 362

Query: 283 YV 284
            V
Sbjct: 363 LV 364


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 152 YGEL--EMKVTEAVVHPRYDPDTVINDVAMLRLPTSARPDLGHGIACL---PNPHQSLP 205
           YG +  E++  E V  P+Y P T+I  + +  +       +G+ I C+    NP    P
Sbjct: 9   YGNISDELRYLEKVRGPKYLPLTLIVPITLTYVVIFVTGFVGNIITCIVIWRNPSMQTP 67


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 187  RPDLGHGIACLPNPHQSLPP 206
            RPDL   +  +  P++ LPP
Sbjct: 1636 RPDLRDELGYIAPPNRKLPP 1655


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,265
Number of Sequences: 429
Number of extensions: 4445
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 297
length of database: 140,377
effective HSP length: 57
effective length of query: 240
effective length of database: 115,924
effective search space: 27821760
effective search space used: 27821760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)