Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000385-TA|BGIBMGA000385-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine, IPR001314|Peptidase S1A, chymotrypsin
         (297 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48930.1 68418.m06053 transferase family protein similar to a...    33   0.30 
At5g24450.1 68418.m02882 transcription factor-related low simila...    28   8.6  
At5g12840.4 68418.m01470 CCAAT-binding transcription factor (CBF...    28   8.6  
At5g12840.3 68418.m01469 CCAAT-binding transcription factor (CBF...    28   8.6  
At5g12840.2 68418.m01468 CCAAT-binding transcription factor (CBF...    28   8.6  
At5g12840.1 68418.m01467 CCAAT-binding transcription factor (CBF...    28   8.6  
At3g49410.1 68416.m05401 transcription factor-related contains w...    28   8.6  

>At5g48930.1 68418.m06053 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase from
           Dianthus caryophyllus [GI:3288180, GI:2239091]; contains
           Pfam profile PF02458 transferase family
          Length = 433

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 40  RAVLQAMPPPAPAIHHEDYRMAPT 63
           R +L+A  PP PA HH +Y+ AP+
Sbjct: 185 RTLLRARDPPQPAFHHVEYQPAPS 208


>At5g24450.1 68418.m02882 transcription factor-related low
           similarity to transcription factor IIIC63 [Homo sapiens]
           GI:5281316
          Length = 545

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 9   KIVKHSAYCYLEGSFCHTWIRNRMQKRQDPGRAVLQAM 46
           + +  +AY +  G F   WI+     R+DP   V Q M
Sbjct: 274 RFLLRAAYYFSGGPFLRFWIKRGYDPRKDPESRVFQRM 311


>At5g12840.4 68418.m01470 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 271

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 183 PTSARPDL-GHGIACLPNPHQ 202
           P    P+L GH IAC+PNP+Q
Sbjct: 113 PLVQPPELVGHYIACVPNPYQ 133


>At5g12840.3 68418.m01469 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 272

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 183 PTSARPDL-GHGIACLPNPHQ 202
           P    P+L GH IAC+PNP+Q
Sbjct: 114 PLVQPPELVGHYIACVPNPYQ 134


>At5g12840.2 68418.m01468 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 271

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 183 PTSARPDL-GHGIACLPNPHQ 202
           P    P+L GH IAC+PNP+Q
Sbjct: 113 PLVQPPELVGHYIACVPNPYQ 133


>At5g12840.1 68418.m01467 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 272

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 183 PTSARPDL-GHGIACLPNPHQ 202
           P    P+L GH IAC+PNP+Q
Sbjct: 114 PLVQPPELVGHYIACVPNPYQ 134


>At3g49410.1 68416.m05401 transcription factor-related contains weak
           similarity to transcription factor IIIC63 (GI:5281316)
           [Homo sapiens]
          Length = 559

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 9   KIVKHSAYCYLEGSFCHTWIRNRMQKRQDPGRAVLQAM 46
           + +  +AY +  G F   WI+     R DP   V Q M
Sbjct: 266 RFLLRAAYYFSSGPFLRFWIKRGYDPRNDPESRVYQRM 303


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.138    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,304,791
Number of Sequences: 28952
Number of extensions: 289677
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 9
length of query: 297
length of database: 12,070,560
effective HSP length: 81
effective length of query: 216
effective length of database: 9,725,448
effective search space: 2100696768
effective search space used: 2100696768
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)